Co-expression analysis

Gene ID 1607417_at
Gene name hypothetical protein LOC100245522
Homology with ArabidopsisSimilar to At2g21730: CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2) (HF=1e-4)
Module size 6 genes
NF 0.48
%ile 72.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8394.60.971607417_atCF512464hypothetical protein LOC100245522-1e-4At2g21730CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)O.I.H.G.S.X.
0.6787.90.961620442_atCB971589hypothetical protein LOC100266848-1e-15At3g02110scpl25 (serine carboxypeptidase-like 25)O.I.H.G.S.X.
0.4464.10.971620170_atCB974375hypothetical protein LOC100246815-1e-4At4g36920AP2 (APETALA 2)O.I.H.G.S.X.
0.3853.60.961621574_atCF511059hypothetical protein LOC100241803-3e-2At5g28290ATNEK3 (NIMA-RELATED KINASE3)O.I.H.G.S.X.
0.3141.30.961611804_atCF513259hypothetical protein LOC100252436-1e-1At2g16890UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.2734.00.961615462_atCB974047--5e+0At3g55520immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.289.9GSM147699Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation28Link to GEO
2.189.1GSM287889Pink soft berry B8 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
1.987.2GSM436404V. riparia (VR, PI588259) LD, 15h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.987.2GSM287891Pink soft berry B23 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.987.2GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
1.987.2GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
1.886.0GSM436419V. riparia (VR, PI588259) SD, 13h 14 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436355Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM436373Seyval (SV, Seyve Villard 5-276) SD, 13h 7 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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