Co-expression analysis

Gene ID	1607415_at
Gene name	hypothetical protein LOC100252123
Homology with Arabidopsis	Similar to At2g01260: unknown protein (HF=9e-1)
Module size	6 genes
NF	0.43
%ile	64.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.99	1607415_at	CB913224	hypothetical protein LOC100252123	-	9e-1	At2g01260	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1616421_s_at	CF213910	hypothetical protein LOC100245272	-	3e-63	At1g22780	PFL (POINTED FIRST LEAVES)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.98	1620525_at	CF415535	similar to RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome	-	5e-47	At3g14600	60S ribosomal protein L18A (RPL18aC)	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.99	1610997_at	CD719330	hypothetical protein LOC100266516	-	1e-13	At3g53890	40S ribosomal protein S21 (RPS21B)	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1606468_at	CB346057	hypothetical protein LOC100256800	-	6e-25	At5g27850	60S ribosomal protein L18 (RPL18C)	O.I.	H.G.	S.X.	Please select
0.14	14.4	0.98	1613860_s_at	CF512506	cyc07	-	6e-38	At3g04840	40S ribosomal protein S3A (RPS3aA)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.7	93.0	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436363	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436380	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436388	V. riparia (VR, PI588259) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.1	89.1	GSM436358	Seyval (SV, Seyve Villard 5-276) LD, 15h 21 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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