Co-expression analysis

Gene ID	1607408_at
Gene name
Homology with Arabidopsis	Similar to At1g10720: BSD domain-containing protein (HF=2e-1)
Module size	7 genes
NF	0.53
%ile	79.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	0.86	1607408_at	CF216013	-	-	2e-1	At1g10720	BSD domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.88	1622291_at	CF518951	hypothetical protein LOC100266558	-	2e-1	At2g31670	-	O.I.	H.G.	S.X.	Please select
0.60	81.9	0.88	1608262_at	AF053341.1	class I extracellular chitinase	-	2e+0	At3g04180	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.85	1618373_at	Z68123.1	acidic chitinase	-	2e-13	At5g24090	acidic endochitinase (CHIB1)	O.I.	H.G.	S.X.	Please select
0.48	68.8	0.77	1608761_at	CB982029	hypothetical protein LOC100253831	-	2e-12	At5g24530	DMR6 (DOWNY MILDEW RESISTANT 6)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.87	1609131_at	CF514932	hypothetical protein LOC100250973	-	4e-7	At1g21245	wall-associated kinase-related	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.81	1620994_at	CD802275	hypothetical LOC100241718 /// hypothetical LOC100267841	-	8e-1	At5g28800	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.2	94.9	GSM147701	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	30
2.5	91.9	GSM147700	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	29
2.5	91.9	GSM147682	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	11
2.4	91.3	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
2.3	90.7	GSM287867	Green hard berry C1 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM287893	Pink soft berry C12 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147706	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	35
2.0	88.2	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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