Co-expression analysis

Gene ID	1607294_at
Gene name	hypothetical protein LOC100246786
Homology with Arabidopsis	Similar to At5g58290: RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) (HF=4e-112)
Module size	6 genes
NF	0.79
%ile	97.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	94.6	0.99	1607294_at	CB347461	hypothetical protein LOC100246786	-	4e-112	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1616931_s_at	CF511798	similar to PBC1 (20S proteasome beta subunit C1); peptidase	-	5e-66	At1g21720	PBC1 (PROTEASOME BETA SUBUNIT C1)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1615440_at	CF210450	hypothetical protein LOC100257857	-	9e-5	At5g49945	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1618227_at	CB981519	hypothetical protein LOC100256050	-	4e-20	At1g73570	suppressor of lin-12-like protein-related / sel-1 protein-related	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1606813_s_at	CF211962	hypothetical protein LOC100245986	-	9e-77	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.99	1619471_at	BQ794353	hypothetical protein LOC100243217	-	1e-112	At3g46060	ATRAB8A	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM147688	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	17
2.6	92.5	GSM322364	genotype: Chardonnay - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM147694	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 24 h post inoculation	23
2.3	90.7	GSM147707	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 48 h post inoculation	36
2.2	89.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.2	89.9	GSM147708	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	37
2.1	89.1	GSM147689	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	18
2.1	89.1	GSM287875	Green hard berry C17 from plant 2 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM147725	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 48 h post inoculation	54
2.0	88.2	GSM322365	genotype: Chardonnay - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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