CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1607289_at

Gene name hypothetical protein LOC100243734
Homology with Arabidopsis Similar to At3g29020: MYB110 (myb domain protein 110) (HF=9e-2)

Module size 16 genes

NF 0.38

%ile 56.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.97 1607289_at CD802115 hypothetical protein LOC100243734 - 9e-2 At3g29020 MYB110 (myb domain protein 110) O.I. H.G. S.X.
0.55 77.3 0.98 1606735_at CB970224 hypothetical protein LOC100249353 - 4e+0 At3g15420 unknown protein O.I. H.G. S.X.
0.52 73.9 0.98 1618642_at CF604519 hypothetical protein LOC100265629 - 5e-13 At5g51410 LUC7 N_terminus domain-containing protein O.I. H.G. S.X.
0.50 72.7 0.99 1613731_at CF513972 hypothetical protein LOC100248748 - 2e-5 At5g63840 RSW3 (RADIAL SWELLING 3) O.I. H.G. S.X.
0.43 61.5 0.98 1612122_at BQ800294 hypothetical protein LOC100246317 /// hypothetical protein LOC100254873 - 1e-17 At3g13870 RHD3 (ROOT HAIR DEFECTIVE 3) O.I. H.G. S.X.
0.41 58.7 0.98 1617131_at CF511594 hypothetical protein LOC100242326 - 2e+0 At1g54095 unknown protein O.I. H.G. S.X.
0.35 48.5 0.98 1615804_at CF403733 - - 4e-2 At5g65910 BSD domain-containing protein O.I. H.G. S.X.
0.34 46.8 0.99 1619715_at CF207152 hypothetical protein LOC100243011 - 5e-39 At1g30470 SIT4 phosphatase-associated family protein O.I. H.G. S.X.
0.34 46.8 0.98 1612431_at CA810329 - - 1e+0 At2g16720 MYB7 (MYB DOMAIN PROTEIN 7) O.I. H.G. S.X.
0.33 45.7 0.98 1614287_at CF510757 hypothetical protein LOC100243855 - 1e-16 At2g20650 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.33 45.7 0.99 1613905_at CF210463 hypothetical protein LOC100254141 - 3e-13 At5g08160 ATPK3 O.I. H.G. S.X.
0.33 45.7 0.99 1620763_at BQ792258 hypothetical protein LOC100264673 - 1e-38 At5g11560 catalytic O.I. H.G. S.X.
0.31 41.3 0.98 1608374_at CF214105 - - 3e-1 At4g03153 kinase interacting family protein O.I. H.G. S.X.
0.31 41.3 0.99 1619972_at CF511808 hypothetical protein LOC100263609 - 2e-1 At5g56770 unknown protein O.I. H.G. S.X.
0.20 22.4 0.98 1611250_at CB922487 hypothetical protein LOC100249628 - 9e-4 At4g24100 protein kinase family protein O.I. H.G. S.X.
0.19 20.9 0.98 1609191_s_at CB978023 hypothetical protein LOC100258056 - 0 At5g26751 ATSK11 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.4 95.5 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.3 95.2 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.1 94.6 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.7 93.0 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64
2.3 90.7 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.2 89.9 GSM147739 Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation 68
2.1 89.1 GSM436408 V. riparia (VR, PI588259) LD, 15h 42 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.1 89.1 GSM147733 Vitis aestivalis 'Norton ' mock inoculateds at 4 h post inoculation 62
2.1 89.1 GSM147721 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 50

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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