CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1607287_a_at

Gene name hypothetical protein LOC100248273
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)

Module size 6 genes

NF 0.65

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1607287_a_at CA817984 hypothetical protein LOC100248273 - 3e-16 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.73 90.8 0.99 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) O.I. H.G. S.X.
0.67 87.9 0.98 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.
0.53 75.2 0.98 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.46 66.5 0.99 1606458_at BQ792397 hypothetical protein LOC100251697 - 4e-11 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.33 45.7 0.98 1606797_at CD714405 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.8	0.98	1607287_a_at	CA817984	hypothetical protein LOC100248273	-	3e-16	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.
0.73	90.8	0.99	1607466_at	CF413978	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	2e-17	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.
0.67	87.9	0.98	1620684_at	CA811105	hypothetical protein LOC100244408	-	5e-10	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.
0.53	75.2	0.98	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.
0.46	66.5	0.99	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1606797_at	CD714405	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.9	0.97	1615470_at	CD720380	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	1e-2	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.
0.63	84.3	0.97	1617052_at	CD800505	-	-	7e+0	At5g48860	unknown protein	O.I.	H.G.	S.X.
0.61	83.2	0.97	1607514_at	CB340815	hypothetical protein LOC100257780	-	4e-3	At4g02530	chloroplast thylakoid lumen protein	O.I.	H.G.	S.X.
0.61	83.2	0.97	1621399_s_at	CF372346	-	-	3e-13	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.
0.60	81.9	0.98	1617061_s_at	CD003896	hypothetical protein LOC100243475	-	2e-15	At5g55220	trigger factor type chaperone family protein	O.I.	H.G.	S.X.
0.59	80.6	0.98	1610716_at	CF211147	hypothetical protein LOC100265925	-	5e-16	At3g15190	chloroplast 30S ribosomal protein S20, putative	O.I.	H.G.	S.X.
0.57	79.8	0.98	1609335_at	CF209330	putative oxygen evolving enhancer protein	-	5e-15	At3g55330	PPL1 (PsbP-like protein 1)	O.I.	H.G.	S.X.
0.55	77.3	0.97	1616857_at	CF210148	hypothetical protein LOC100254249	-	7e-8	At1g74070	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	O.I.	H.G.	S.X.
0.55	77.3	0.97	1617402_at	CF373232	-	-	1e+0	At5g55450	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.53	75.2	0.97	1610549_at	CF405661	-	-	1e-9	At4g01690	PPOX	O.I.	H.G.	S.X.
0.50	72.7	0.97	1619641_at	CB339547	-	-	7e-98	Atcg00040	-	O.I.	H.G.	S.X.
0.50	72.7	0.97	1608628_at	CF074739	hypothetical protein LOC100262894	-	1e-22	At3g01480	CYP38 (cyclophilin 38)	O.I.	H.G.	S.X.
0.50	72.7	0.98	1615609_at	CB971917	hypothetical protein LOC100268043	-	1e-11	At3g25920	RPL15	O.I.	H.G.	S.X.
0.42	60.1	0.96	1615308_at	CD004852	-	-	1e+0	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.
0.42	60.1	0.98	1609228_at	CF403419	hypothetical protein LOC100247047	-	9e-5	At2g21385	unknown protein	O.I.	H.G.	S.X.
0.42	60.1	0.97	1622109_at	BQ799737	hypothetical protein LOC100259756	-	5e-10	At1g05385	photosystem II 11 kDa protein-related	O.I.	H.G.	S.X.
0.40	57.7	0.95	1609193_at	CF214749	hypothetical protein LOC100249838	-	3e-1	At5g39210	CRR7 (CHLORORESPIRATORY REDUCTION 7)	O.I.	H.G.	S.X.
0.40	57.7	0.98	1614655_at	CB969062	hypothetical protein LOC100267459	-	2e-61	At5g45930	CHLI2 (MAGNESIUM CHELATASE I2)	O.I.	H.G.	S.X.
0.38	53.6	0.92	1618482_x_at	CF203697.1	-	-	2e+0	At5g50370	adenylate kinase, putative	O.I.	H.G.	S.X.
0.38	53.6	0.93	1611467_at	CF373105	hypothetical protein LOC100255707	-	6e-2	At4g10310	HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1)	O.I.	H.G.	S.X.
0.36	50.7	0.98	1610546_at	CB976033	similar to Os12g0541500	-	1e-35	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.
0.33	45.7	0.96	1613645_at	CF201766.1	hypothetical protein LOC100248623	-	7e-55	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.
0.33	45.7	0.98	1622495_at	BM436258	hypothetical protein LOC100248841	-	4e-26	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.
0.33	45.7	0.99	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.
0.33	45.7	0.99	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.
0.32	43.1	0.92	1613853_s_at	CF203997.1	-	-	3e-1	At5g54150	unknown protein	O.I.	H.G.	S.X.
0.32	43.1	0.98	1616097_at	CB917778	hypothetical protein LOC100259438	-	2e-4	At2g43560	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.92	1614752_at	CB343068	-	-	6e-2	At3g17820	ATGSKB6	O.I.	H.G.	S.X.
0.31	41.3	0.96	1608038_at	CB002684	-	-	8e-7	At4g12970	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.93	1608553_at	CF415066	-	-	2e-1	At5g27495	ion channel inhibitor	O.I.	H.G.	S.X.
0.30	39.4	0.96	1607549_at	CF606475	hypothetical protein LOC100256476	-	3e-6	At3g04550	unknown protein	O.I.	H.G.	S.X.
0.30	39.4	0.96	1619235_at	CB969704	hypothetical protein LOC100266132	-	3e-5	At1g15380	lactoylglutathione lyase family protein / glyoxalase I family protein	O.I.	H.G.	S.X.
0.30	39.4	0.97	1619477_at	CA809390	hypothetical protein LOC100250737	-	3e-59	At3g48730	GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)	O.I.	H.G.	S.X.
0.29	37.7	0.97	1613768_at	CD005877	hypothetical protein LOC100252130	-	2e-11	At3g14930	HEME1	O.I.	H.G.	S.X.
0.29	37.7	0.98	1614446_at	CF414415	hypothetical protein LOC100251108	-	3e-13	At2g39080	binding / catalytic	O.I.	H.G.	S.X.
0.28	37.7	0.95	1612707_at	CD801530	hypothetical protein LOC100263457	-	3e-14	At5g23310	FSD3 (FE SUPEROXIDE DISMUTASE 3)	O.I.	H.G.	S.X.
0.28	37.7	0.95	1621184_at	CD009048	-	-	3e+1	At3g02555	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.95	1620983_at	CF207286	hypothetical protein LOC100267272	-	3e-10	At5g01320	pyruvate decarboxylase, putative	O.I.	H.G.	S.X.
0.26	32.0	0.97	1606713_at	BQ797803	hypothetical protein LOC100242823	-	2e-43	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.
0.26	32.0	0.97	1613697_at	CB971590	hypothetical protein LOC100261413	-	1e-119	At5g35630	GS2 (GLUTAMINE SYNTHETASE 2)	O.I.	H.G.	S.X.
0.26	32.0	0.94	1611998_at	CB344145	hypothetical protein LOC100257865	-	4e+0	At3g15540	IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19)	O.I.	H.G.	S.X.
0.25	30.5	0.95	1609878_at	CF514109	hypothetical protein LOC100249500	-	2e+0	At2g32720	CB5-B (CYTOCHROME B5 ISOFORM B)	O.I.	H.G.	S.X.
0.25	30.5	0.96	1618599_at	CF209358	-	-	2e-2	At4g25100	FSD1 (FE SUPEROXIDE DISMUTASE 1)	O.I.	H.G.	S.X.
0.25	30.5	0.97	1615139_at	CF206723.1	hypothetical protein LOC100264493	-	6e-3	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.
0.25	30.5	0.97	1613843_at	CF404498	hypothetical protein LOC100259632	-	2e-4	At4g15510	photosystem II reaction center PsbP family protein	O.I.	H.G.	S.X.
0.25	30.5	0.98	1608871_at	CB340733	hypothetical protein LOC100266016	-	1e-16	At2g35500	shikimate kinase-related	O.I.	H.G.	S.X.
0.25	30.5	0.98	1619899_at	CF403654	-	-	1e+0	At1g65740	F-box family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 99.5 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8 99.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
5.8 98.6 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8 93.4 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5 91.9 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
8.8	99.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
5.8	98.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage

Gene ID	1607287_a_at
Gene name	hypothetical protein LOC100248273
Homology with Arabidopsis	Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)
Module size	6 genes
NF	0.65
%ile	91.0

Co-expression analysis

Gene ID 1607287_a_at Gene name hypothetical protein LOC100248273 Homology with ArabidopsisSimilar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16) Module size 6 genes NF 0.65 %ile 91.0

Co-expressed genes

Specific experiments for the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareOryza_sativaPopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID 1607287_a_at

Gene name hypothetical protein LOC100248273
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)

Module size 6 genes

NF 0.65

%ile 91.0

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays