Co-expression analysis

Gene ID	1607287_a_at
Gene name	hypothetical protein LOC100248273
Homology with Arabidopsis	Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)
Module size	6 genes
NF	0.65
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1607287_a_at	CA817984	hypothetical protein LOC100248273	-	3e-16	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1607466_at	CF413978	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	2e-17	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1620684_at	CA811105	hypothetical protein LOC100244408	-	5e-10	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1606797_at	CD714405	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	99.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
5.8	98.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the maize gene, Zm.16299.2.A1_a_at, orthologous to the query gene, 1607287_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	Zm.16299.2.A1_a_at	At3g56910	50S ribosomal protein L40	-	7e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.80	94.0	Zm.17694.1.S1_at	At3g56910	-	-	5e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	O.I.	H.G.	S.X.	Please select
0.73	89.9	Zm.2267.1.S1_a_at	At3g56910	hypothetical protein LOC100216854	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.71	88.2	ZmAffx.283.1.S1_at	At3g56910	-	-	3e+0	At3g23175	lesion inducing protein-related	O.I.	H.G.	S.X.	Please select
0.68	86.1	Zm.9670.2.A1_a_at	At3g56910	-	-	4e-4	At1g60660	CB5LP (CYTOCHROME B5-LIKE PROTEIN)	O.I.	H.G.	S.X.	Please select
0.67	85.8	ZmAffx.57.1.S1_at	At3g56910	-	-	1e+1	At3g43083	LCR33 (Low-molecular-weight cysteine-rich 33)	O.I.	H.G.	S.X.	Please select
0.63	81.1	Zm.11655.1.A1_at	At3g56910	Grx_C8 - glutaredoxin subgroup III	-	3e-17	At3g02000	ROXY1	O.I.	H.G.	S.X.	Please select
0.60	77.8	Zm.18083.2.A1_at	At3g56910	-	-	1e-12	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.59	76.1	Zm.1808.1.A1_at	At3g56910	Hypothetical protein LOC100191963	-	2e+0	At2g34585	unknown protein	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.2267.1.A1_at	At3g56910	Hypothetical protein LOC100216854	-	7e-7	At1g79860	ROPGEF12 (RHO GUANYL-NUCLEOTIDE EXCHANGE FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.58	75.1	Zm.11993.1.A1_at	At3g56910	-	-	4e+0	At3g26980	MUB4 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 4 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.56	74.4	Zm.2269.1.S1_at	At3g56910	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.55	71.6	Zm.5741.2.A1_at	At3g56910	Hypothetical protein LOC100191775	-	4e+0	At5g46940	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	ZmAffx.820.1.S1_at	At3g56910	hypothetical protein LOC100217195	-	8e-1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	Zm.11764.1.A1_at	At3g56910	GIR1 /// GIR1	-	1e+0	At5g62210	embryo-specific protein-related	O.I.	H.G.	S.X.	Please select
0.42	51.3	Zm.7060.1.A1_at	At3g56910	-	-	4e-1	At3g10500	anac053 (Arabidopsis NAC domain containing protein 53)	O.I.	H.G.	S.X.	Please select
0.41	49.7	Zm.127.1.A1_a_at	At3g56910	octopine synthase binding factor1	-	1e-8	At5g14760	AO (L-ASPARTATE OXIDASE)	O.I.	H.G.	S.X.	Please select
0.41	49.7	ZmAffx.788.1.A1_at	At3g56910	-	-	8e-1	At4g33925	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	ZmAffx.70.1.A1_at	At3g56910	-	-	8e-1	At2g37780	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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