CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1607287_a_at

Gene name hypothetical protein LOC100248273
Homology with Arabidopsis Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)

Module size 6 genes

NF 0.65

%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.8 0.98 1607287_a_at CA817984 hypothetical protein LOC100248273 - 3e-16 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.73 90.8 0.99 1607466_at CF413978 similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome - 2e-17 At1g05190 emb2394 (embryo defective 2394) O.I. H.G. S.X.
0.67 87.9 0.98 1620684_at CA811105 hypothetical protein LOC100244408 - 5e-10 At1g64510 ribosomal protein S6 family protein O.I. H.G. S.X.
0.53 75.2 0.98 1608691_at CB345817 hypothetical protein LOC100248623 - 6e-27 At1g78630 emb1473 (embryo defective 1473) O.I. H.G. S.X.
0.46 66.5 0.99 1606458_at BQ792397 hypothetical protein LOC100251697 - 4e-11 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.33 45.7 0.98 1606797_at CD714405 similar to 50S ribosomal protein L17, chloroplastic - 3e-8 At3g54210 ribosomal protein L17 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.8 99.5 GSM299457 C_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8 99.0 GSM147717 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation 46
5.8 98.6 GSM299461 C_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5 98.4 GSM299453 B_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2 94.9 GSM299459 D_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0 94.2 GSM299455 C_ni_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299451 B_ni_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9 93.8 GSM299456 C_i_rep1 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8 93.4 GSM299454 B_i_rep2 GSE11857 Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5 91.9 GSM147735 Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation 64

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28336.1.S1_x_at, orthologous to the query gene, 1607287_a_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 86.9 Ta.28336.1.S1_x_at At3g56910 - - 1e-1 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.71 88.0 Ta.7966.1.S1_a_at At3g56910 - - 4e-3 At3g56910 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) O.I. H.G. S.X.
0.70 87.2 Ta.7780.3.S1_x_at At3g56910 - - 9e-1 Atmg00410 - O.I. H.G. S.X.
0.69 86.9 Ta.24301.1.A1_s_at At3g56910 - - 4e+0 At5g59580 UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1) O.I. H.G. S.X.
0.67 86.3 Ta.498.3.S1_at At3g56910 - - 5e-12 At3g14930 HEME1 O.I. H.G. S.X.
0.67 86.3 Ta.14225.1.S1_x_at At3g56910 - - 1e-1 At5g54600 50S ribosomal protein L24, chloroplast (CL24) O.I. H.G. S.X.
0.65 83.9 Ta.1452.2.S1_a_at At3g56910 - - 4e-3 At1g48350 ribosomal protein L18 family protein O.I. H.G. S.X.
0.64 83.6 TaAffx.128618.1.S1_at At3g56910 - - 6e-1 At3g17730 anac057 (Arabidopsis NAC domain containing protein 57) O.I. H.G. S.X.
0.63 83.1 Ta.14183.1.S1_at At3g56910 hypothetical LOC543077 - 2e-3 At3g44890 RPL9 (RIBOSOMAL PROTEIN L9) O.I. H.G. S.X.
0.61 82.0 Ta.18149.1.S1_x_at At3g56910 - - 8e+0 At2g04864 unknown protein O.I. H.G. S.X.
0.61 82.0 Ta.14225.3.S1_at At3g56910 - - 7e-2 At5g54600 50S ribosomal protein L24, chloroplast (CL24) O.I. H.G. S.X.
0.57 79.2 Ta.21192.1.S1_x_at At3g56910 - - 6e+0 At5g54095 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Zea_mays

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