Co-expression analysis

Gene ID 1607287_a_at
Gene name hypothetical protein LOC100248273
Homology with ArabidopsisSimilar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)
Module size 6 genes
NF 0.65
%ile 91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.981607287_a_atCA817984hypothetical protein LOC100248273-3e-16At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.7390.80.991607466_atCF413978similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome-2e-17At1g05190emb2394 (embryo defective 2394)O.I.H.G.S.X.
0.6787.90.981620684_atCA811105hypothetical protein LOC100244408-5e-10At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.
0.5375.20.981608691_atCB345817hypothetical protein LOC100248623-6e-27At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.4666.50.991606458_atBQ792397hypothetical protein LOC100251697-4e-11At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.3345.70.981606797_atCD714405similar to 50S ribosomal protein L17, chloroplastic-3e-8At3g54210ribosomal protein L17 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.899.5GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
6.899.0GSM147717Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation46Link to GEO
5.898.6GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
5.598.4GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM299459D_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM299455C_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299451B_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.893.4GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.591.9GSM147735Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation64Link to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0278900, orthologous to the query gene, 1607287_a_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.9Os01g0278900At3g56910-Hypothetical protein3e-7At3g56910PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)O.I.H.G.S.X.
0.8395.8Os01g0678600At3g56910-Ribosomal protein S20 family protein1e-1At4g30460glycine-rich proteinO.I.H.G.S.X.
0.7391.1Os02g0822600At3g56910-50S ribosomal protein L9, chloroplast precursor(CL13)2e+0At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.6787.2Os03g0219900At3g56910-50S ribosomal protein L15, chloroplast precursor(CL15) (Fragment)5e-1At3g25920RPL15O.I.H.G.S.X.
0.6787.2Os01g0749200At3g56910-50S ribosomal protein L131e-20At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.6382.7Os03g0843400At3g56910-30S ribosomal protein S6, chloroplast precursor(Fragment)3e-2At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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