Co-expression analysis

Gene ID	1607287_a_at
Gene name	hypothetical protein LOC100248273
Homology with Arabidopsis	Similar to At3g56910: PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) (HF=3e-16)
Module size	6 genes
NF	0.65
%ile	91.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.98	1607287_a_at	CA817984	hypothetical protein LOC100248273	-	3e-16	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	1607466_at	CF413978	similar to EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome	-	2e-17	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.98	1620684_at	CA811105	hypothetical protein LOC100244408	-	5e-10	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.99	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1606797_at	CD714405	similar to 50S ribosomal protein L17, chloroplastic	-	3e-8	At3g54210	ribosomal protein L17 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.8	99.5	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
6.8	99.0	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
5.8	98.6	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
5.5	98.4	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.2	94.9	GSM299459	D_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM299455	C_ni_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299451	B_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.9	93.8	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.8	93.4	GSM299454	B_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM147735	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	64

Inter-species module comparison

A co-expression module including the soybean gene, Gma.11226.1.S1_at, orthologous to the query gene, 1607287_a_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.75	89.5	Gma.11226.1.S1_at	At3g56910	-	-	4e-7	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.78	90.6	Gma.10078.1.S1_at	At3g56910	-	-	3e+0	At4g26520	fructose-bisphosphate aldolase, cytoplasmic	O.I.	H.G.	S.X.	Please select
0.72	88.1	Gma.7012.1.S1_a_at	At3g56910	-	-	7e-3	At3g29070	protein transmembrane transporter	O.I.	H.G.	S.X.	Please select
0.70	87.1	Gma.7972.1.S1_at	At3g56910	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.70	87.1	Gma.11178.1.S1_at	At3g56910	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	Gma.13001.2.S1_a_at	At3g56910	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.7200.1.S1_at	At3g56910	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.62	82.1	Gma.5851.3.S1_at	At3g56910	-	-	1e-11	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.5413.3.S1_a_at	At3g56910	-	-	1e-9	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.10730.1.S1_at	At3g56910	-	-	1e-16	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.4606.1.S1_at	At3g56910	-	-	9e-12	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.1956.2.S1_a_at	At3g56910	-	-	2e-2	At5g25600	-	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.2305.1.S1_at	At3g56910	-	-	2e-19	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.14800.1.S1_at	At3g56910	-	-	9e-12	At3g07670	SET domain-containing protein	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.3274.1.S1_at	At3g56910	-	-	6e-2	At5g53580	aldo/keto reductase family protein	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.11183.1.S1_at	At3g56910	Putative plastid triose phophate translocator mRNA, partial cds; nuclear gene for plastid product	-	2e-88	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	O.I.	H.G.	S.X.	Please select
0.50	71.7	Gma.17460.1.S1_s_at	At3g56910	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.49	68.3	Gma.11210.1.S1_at	At3g56910	-	-	3e-23	At2g33450	50S ribosomal protein L28, chloroplast (CL28)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.3128.1.S1_at	At3g56910	-	-	1e-100	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.16054.1.S1_at	At3g56910	-	-	7e-6	At4g16410	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	63.9	GmaAffx.45130.1.S1_at	At3g56910	-	-	4e-1	At1g79220	mitochondrial transcription termination factor family protein / mTERF family protein	O.I.	H.G.	S.X.	Please select
0.44	63.3	Gma.6218.1.S1_x_at	At3g56910	-	-	2e+0	At2g04170	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	Gma.10595.1.S1_at	At3g56910	-	-	2e-40	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.40	57.1	Gma.8393.1.A1_a_at	At3g56910	-	-	5e+0	At2g04790	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.64090.1.S1_at	At3g56910	-	-	2e-20	At4g29060	emb2726 (embryo defective 2726)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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