CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1607234_at

Gene name
Homology with Arabidopsis Similar to Atmg00820: - (HF=3e-1)

Module size 15 genes

NF 0.24

%ile 34.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.88 95.4 0.65 1607234_at CF373784 - - 3e-1 Atmg00820 - O.I. H.G. S.X.
0.40 57.7 0.86 1619082_at CF215502 hypothetical protein LOC100244103 - 3e-26 At1g26770 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) O.I. H.G. S.X.
0.35 48.5 0.91 1617919_at CF605842 hypothetical protein LOC100261876 - 2e+0 At4g26830 catalytic/ cation binding / hydrolase, hydrolyzing O-glycosyl compounds O.I. H.G. S.X.
0.34 46.8 0.90 1616761_at CF606556 hypothetical protein LOC100243770 - 6e-5 At4g28310 unknown protein O.I. H.G. S.X.
0.30 39.4 0.87 1615445_at BQ794327 - - 5e-3 At5g02380 MT2B (METALLOTHIONEIN 2B) O.I. H.G. S.X.
0.29 37.7 0.92 1613562_at CF210939 hypothetical protein LOC100247400 - 3e-2 At1g73010 phosphatase O.I. H.G. S.X.
0.26 32.0 0.77 1609159_at CF213225 hypothetical protein LOC100254544 - 4e-6 At1g56430 NAS4 (NICOTIANAMINE SYNTHASE 4) O.I. H.G. S.X.
0.21 24.0 0.87 1613614_at CB975388 hypothetical protein LOC100252480 - 3e-16 At1g26945 KDR (KIDARI) O.I. H.G. S.X.
0.19 20.9 0.92 1615464_at CF604585 hypothetical protein LOC100264148 - 2e-1 At2g34050 - O.I. H.G. S.X.
0.18 19.4 0.83 1621058_at CF205681.1 - - 8e-2 At3g15360 TRX-M4 (ARABIDOPSIS THIOREDOXIN M-TYPE 4) O.I. H.G. S.X.
0.17 18.2 0.93 1614689_at CF511280 hypothetical protein LOC100240753 - 5e-6 At2g36200 kinesin motor protein-related O.I. H.G. S.X.
0.16 16.7 0.93 1618428_at CK138131.1 - - 1e-37 At1g27400 60S ribosomal protein L17 (RPL17A) O.I. H.G. S.X.
0.13 13.3 0.91 1621328_at CK138241.1 - - 9e-1 At4g18470 SNI1 O.I. H.G. S.X.
0.11 11.3 0.91 1608056_at CF511408 hypothetical protein LOC100254490 - 4e-31 At1g08880 H2AXA O.I. H.G. S.X.
0.08 8.5 0.92 1622440_at CF372331 similar to predicted protein - 5e-43 At5g10400 histone H3 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.4 91.3 GSM147710 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 39
2.3 90.7 GSM147708 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation 37
2.2 89.9 GSM322367 genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM147722 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 51
2.1 89.1 GSM322364 genotype: Chardonnay - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM147709 Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 38
2.1 89.1 GSM322365 genotype: Chardonnay - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.1 89.1 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM322361 genotype: Chardonnay - disease type: Bois Noir infected - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.0 88.2 GSM322363 genotype: Chardonnay - disease type: Bois Noir infected - rep3 GSE12842 Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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