Co-expression analysis

Gene ID	1607146_at
Gene name	hypothetical LOC100266416
Homology with Arabidopsis	Similar to At1g13550: unknown protein (HF=8e-2)
Module size	15 genes
NF	0.10
%ile	17.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.65	85.0	0.84	1607146_at	CK138255.1	hypothetical LOC100266416	-	8e-2	At1g13550	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.93	1609237_at	CF205706.1	-	-	3e-1	At1g15800	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.89	1621307_at	CB969961	hypothetical protein LOC100267022	-	2e-21	At3g44720	ADT4 (arogenate dehydratase 4)	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.89	1610623_s_at	CD802108	hypothetical protein LOC100258038	-	2e-1	At5g65180	-	O.I.	H.G.	S.X.	Please select
0.20	22.4	0.93	1608898_at	CA818027	hypothetical protein LOC100250146	-	3e-4	At5g20110	dynein light chain, putative	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.90	1606659_s_at	CF210179	hypothetical protein LOC100244564	-	2e-19	At1g29280	WRKY65	O.I.	H.G.	S.X.	Please select
0.17	18.2	0.91	1620443_s_at	CF609276	hypothetical protein LOC100245907 /// hypothetical protein LOC100265993	-	2e-1	At5g65870	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.15	15.6	0.93	1611244_at	CD010208	hypothetical protein LOC100261363	-	1e+0	At3g07850	exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.91	1619357_at	CB972316	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase	-	3e-71	At1g22410	2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative	O.I.	H.G.	S.X.	Please select
0.11	11.3	0.90	1614464_s_at	BQ797149	similar to pathogenesis-related protein 10	-	2e+0	At3g23850	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.91	1606597_at	CF208068	hypothetical protein LOC100252298	-	3e-1	At1g32583	-	O.I.	H.G.	S.X.	Please select
0.09	9.4	0.93	1618341_s_at	CF213479	hypothetical protein LOC100247519	-	6e-3	At3g54570	calmodulin-binding protein-related	O.I.	H.G.	S.X.	Please select
0.06	6.8	0.91	1612238_s_at	CF202919.1	hypothetical protein LOC100268142	-	7e+0	At5g09711	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.91	1615800_at	CA814508	hypothetical protein LOC100250580	-	1e+1	At2g46375	unknown protein	O.I.	H.G.	S.X.	Please select
0.04	5.2	0.89	1618804_at	CF605303	-	-	5e+0	At5g14370	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.9	93.8	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM436381	Seyval (SV, Seyve Villard 5-276) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436370	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM287873	Green hard berry B9 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.0	88.2	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436369	Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436352	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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