Co-expression analysis

Gene ID 1607058_at
Gene name hypothetical protein LOC100251716
Homology with ArabidopsisSimilar to At2g46110: KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1) (HF=7e-5)
Module size 12 genes
NF 0.89
%ile 99.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7390.80.931607058_atCF372471hypothetical protein LOC100251716-7e-5At2g46110KPHMT1 (KETOPANTOATE HYDROXYMETHYLTRANSFERASE 1)O.I.H.G.S.X.
0.9699.70.941620964_s_atS63225.1stilbene synthase /// stilbene synthase /// hypothetical protein LOC100252908 /// hypothetical LOC100253166 /// resveratrol synthase-6e-1At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.9299.00.941611190_s_atAF274281.1stilbene synthase /// stilbene synthase /// hypothetical protein LOC100252908 /// resveratrol synthase-2e+0At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.9299.00.941613344_atCF202628.1--4e+0At5g17650glycine/proline-rich proteinO.I.H.G.S.X.
0.9299.00.951612722_atCF372454hypothetical protein LOC100264158-2e+0At4g1810060S ribosomal protein L32 (RPL32A)O.I.H.G.S.X.
0.9198.80.941609696_x_atS63225.1hypothetical LOC100253166-6e-1At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.9198.80.951610850_atS63225.1hypothetical LOC100253166-6e-1At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.8895.40.941611385_atCF206354.1--1e+1At3g02540RAD23-3 (PUTATIVE DNA REPAIR PROTEIN RAD23-3)O.I.H.G.S.X.
0.8394.60.941620342_atCF207053.1O-methyltransferase-like-3e-5At5g54160ATOMT1 (O-METHYLTRANSFERASE 1)O.I.H.G.S.X.
0.8193.70.931617355_atCF604658hypothetical protein LOC100251716-9e-23At3g61530PANB2O.I.H.G.S.X.
0.7691.50.921609697_atCF207058.1Stilbene synthase 4-6e-6At5g13930TT4 (TRANSPARENT TESTA 4)O.I.H.G.S.X.
0.7591.30.941616445_atCD716014hypothetical protein LOC100262839-1e+0At5g67060HEC1 (HECATE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
5.798.5GSM299456C_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.495.5GSM147741Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation70Link to GEO
3.495.5GSM147711Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation40Link to GEO
3.194.6GSM147728Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation57Link to GEO
3.094.2GSM147729Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation58Link to GEO
3.094.2GSM299454B_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.993.8GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.591.9GSM287877Green hard berry B12 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.491.3GSM287875Green hard berry C17 from plant 2 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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