CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1606948_at

Gene name hypothetical protein LOC100266705
Homology with Arabidopsis Similar to At1g74530: unknown protein (HF=2e-2)

Module size 6 genes

NF 0.51

%ile 75.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 0.95 1606948_at CF404230 hypothetical protein LOC100266705 - 2e-2 At1g74530 unknown protein O.I. H.G. S.X.
0.73 90.8 0.96 1614812_s_at CF372270 hypothetical protein LOC100265283 - 2e-27 At3g02580 STE1 (STEROL 1) O.I. H.G. S.X.
0.67 87.9 0.96 1608397_at CB971352 hypothetical protein LOC100250547 - 4e+0 At3g26420 ATRZ-1A O.I. H.G. S.X.
0.60 81.9 0.95 1622345_at CB970837 hypothetical protein LOC100266705 - 3e-14 At1g73050 (R)-mandelonitrile lyase, putative / (R)-oxynitrilase, putative O.I. H.G. S.X.
0.40 57.7 0.95 1613602_at CF513870 hypothetical LOC100254354 - 8e+0 At5g02470 DPA O.I. H.G. S.X.
0.21 24.0 0.96 1608211_at CD798213 hypothetical protein LOC100247578 - 6e+0 At3g55490 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.8 93.4 GSM147679 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 8
2.4 91.3 GSM147686 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 15
2.4 91.3 GSM147685 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 14
2.2 89.9 GSM147698 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 27
2.1 89.1 GSM147703 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation 32
2.0 88.2 GSM147697 Vitis vinifera 'Cabernet sauvignon' mock inoculateds at 4 h post inoculation 26
1.9 87.2 GSM147692 Vitis vinifera 'Cabernet sauvignon' mock inoculated at 8 h post inoculation 21
1.9 87.2 GSM147674 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 3
1.9 87.2 GSM147673 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation 2
1.9 87.2 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9

Inter-species module comparison

A co-expression module including the barley gene, Contig10826_at, orthologous to the query gene, 1606948_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.74 89.1 Contig10826_at At1g74530 - - 3e-2 At1g59800 cullin-related O.I. H.G. S.X.
0.61 78.7 Contig6020_at At1g74530 - - 5e-5 At3g50670 U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K) O.I. H.G. S.X.
0.38 49.5 Contig12304_at At1g74530 - - 1e-2 At3g25580 thioredoxin-related O.I. H.G. S.X.
0.35 45.1 Contig12241_at At1g74530 - - 9e+0 At5g44550 integral membrane family protein O.I. H.G. S.X.
0.32 40.3 Contig9039_at At1g74530 - - 1e-2 At1g49730 protein kinase family protein O.I. H.G. S.X.
0.29 35.5 Contig2799_at At1g74530 - - 9e-41 At2g30970 ASP1 (ASPARTATE AMINOTRANSFERASE 1) O.I. H.G. S.X.
0.27 32.1 Contig12838_at At1g74530 - - 4e-3 At5g18070 DRT101 (DNA-DAMAGE-REPAIR/TOLERATION 101) O.I. H.G. S.X.
0.23 26.1 Contig11318_at At1g74530 - - 7e-40 At5g20020 RAN2 O.I. H.G. S.X.
0.15 14.1 Contig10471_at At1g74530 - - 2e+0 At4g29030 glycine-rich protein O.I. H.G. S.X.
0.13 11.6 Contig22918_at At1g74530 - - 3e-1 At2g21140 ATPRP2 (PROLINE-RICH PROTEIN 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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