CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1606871_at

Gene name hypothetical protein LOC100265666
Homology with Arabidopsis Similar to At4g11090: unknown protein (HF=1e-3)

Module size 6 genes

NF 0.35

%ile 51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 0.97 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein O.I. H.G. S.X.
0.71 89.5 0.96 1616046_at CD012880 - - 9e-6 At1g08280 glycosyl transferase family 29 protein / sialyltransferase family protein O.I. H.G. S.X.
0.55 77.3 0.97 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.22 25.6 0.97 1606682_at BQ796871 hypothetical protein LOC100265566 - 2e-18 At2g30460 - O.I. H.G. S.X.
0.19 20.9 0.97 1608494_at CF603964 hypothetical protein LOC100253260 - 1e-76 At2g34560 katanin, putative O.I. H.G. S.X.
0.16 16.7 0.97 1608307_at CF209143 hypothetical protein LOC100247674 - 2e-1 At2g33300 - O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.96	1619842_s_at	BQ793715	hypothetical protein LOC100244132	-	1e+0	At5g08220	unknown protein	O.I.	H.G.	S.X.
0.50	72.7	0.96	1610151_at	CF404642	hypothetical protein LOC100257581	-	1e-13	At4g28000	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	O.I.	H.G.	S.X.
0.46	66.5	0.92	1611778_at	CB343314	-	-	2e-1	At2g41430	ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15)	O.I.	H.G.	S.X.
0.46	66.5	0.95	1607426_at	AF159124.1	beta-galactosidase	-	9e-26	At4g36360	BGAL3 (beta-galactosidase 3)	O.I.	H.G.	S.X.
0.40	57.7	0.93	1610902_at	BQ800284	-	-	2e+0	At4g19390	-	O.I.	H.G.	S.X.
0.38	53.6	0.93	1607837_at	CB973483	hypothetical protein LOC100243647	-	4e+0	At3g62530	PBS lyase HEAT-like repeat-containing protein	O.I.	H.G.	S.X.
0.36	50.7	0.95	1610170_at	CB968929	hypothetical protein LOC100242129	-	1e+0	At2g18500	OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)	O.I.	H.G.	S.X.
0.32	43.1	0.94	1611984_at	CB918447	-	-	9e-2	At3g03590	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.
0.32	43.1	0.94	1613232_at	CF516759	hypothetical LOC100244581	-	1e+0	At1g15710	prephenate dehydrogenase family protein	O.I.	H.G.	S.X.
0.31	41.3	0.95	1619655_at	CF604767	hypothetical protein LOC100252634	-	4e-1	At3g09480	histone H2B, putative	O.I.	H.G.	S.X.
0.30	39.4	0.94	1607040_at	CF568797	-	-	5e-24	At1g54610	protein kinase family protein	O.I.	H.G.	S.X.
0.30	39.4	0.94	1609732_at	CF415377	hypothetical protein LOC100253369	-	4e-3	At3g15870	oxidoreductase	O.I.	H.G.	S.X.
0.29	37.7	0.94	1617917_at	CF405637	-	-	4e+0	At1g53100	acetylglucosaminyltransferase	O.I.	H.G.	S.X.
0.29	37.7	0.96	1615948_at	CA814177	hypothetical protein LOC100250651	-	6e-37	At1g10030	ERG28 (Arabidopsis homolog of yeast ergosterol28)	O.I.	H.G.	S.X.
0.29	37.7	0.97	1614744_at	CB977458	hypothetical protein LOC100259020	-	3e-13	At3g07210	unknown protein	O.I.	H.G.	S.X.
0.27	34.0	0.96	1620472_at	BQ799192	hypothetical protein LOC100254248	-	5e-6	At4g02630	protein kinase family protein	O.I.	H.G.	S.X.
0.25	30.5	0.94	1612935_at	AY427200.1	hypothetical protein LOC100263011	-	2e+0	At2g47880	glutaredoxin family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 99.4 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.8 99.0 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.5 98.4 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.3 97.2 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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