CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1606871_at

Gene name hypothetical protein LOC100265666
Homology with Arabidopsis Similar to At4g11090: unknown protein (HF=1e-3)

Module size 6 genes

NF 0.35

%ile 51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.5 0.97 1606871_at CB970216 hypothetical protein LOC100265666 - 1e-3 At4g11090 unknown protein O.I. H.G. S.X.
0.71 89.5 0.96 1616046_at CD012880 - - 9e-6 At1g08280 glycosyl transferase family 29 protein / sialyltransferase family protein O.I. H.G. S.X.
0.55 77.3 0.97 1616682_at CF512457 hypothetical protein LOC100266059 - 9e-37 At4g18030 dehydration-responsive family protein O.I. H.G. S.X.
0.22 25.6 0.97 1606682_at BQ796871 hypothetical protein LOC100265566 - 2e-18 At2g30460 - O.I. H.G. S.X.
0.19 20.9 0.97 1608494_at CF603964 hypothetical protein LOC100253260 - 1e-76 At2g34560 katanin, putative O.I. H.G. S.X.
0.16 16.7 0.97 1608307_at CF209143 hypothetical protein LOC100247674 - 2e-1 At2g33300 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.1 99.4 GSM287904 Red soft berry C31 from plant 2 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
6.8 99.0 GSM287900 Red soft berry C15 from plant 1 cluster distal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
5.5 98.4 GSM287901 Red soft berry C16 from plant 1 cluster distal position, biological rep 2 GSE11406 Expression data in individual grape berries during ripening initation
4.3 97.2 GSM436425 V. riparia (VR, PI588259) SD, 13h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
4.3 97.2 GSM287897 Red soft berry C29 from plant 2 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation
3.9 96.6 GSM436424 V. riparia (VR, PI588259) SD, 13h 28 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
3.9 96.6 GSM436426 V. riparia (VR, PI588259) SD, 13h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.7 96.2 GSM436348 Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM436422 V. riparia (VR, PI588259) SD, 13h 21 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
3.5 95.7 GSM287898 Red soft berry B14 from plant 1 cluster proximal position, biological rep 1 GSE11406 Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3659.1.A1_s_at, orthologous to the query gene, 1606871_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 99.2 Ptp.3659.1.A1_s_at At4g11090 hypothetical protein - 2e+0 At4g01080 unknown protein O.I. H.G. S.X.
0.67 91.1 PtpAffx.13929.1.A1_at At4g11090 calcium dependent protein kinase 14 - 6e-21 At5g12480 CPK7 (calmodulin-domain protein kinase 7) O.I. H.G. S.X.
0.60 86.0 PtpAffx.5888.2.A1_at At4g11090 hypothetical protein - 9e-53 At5g03300 ADK2 (ADENOSINE KINASE 2) O.I. H.G. S.X.
0.43 69.7 Ptp.6363.1.S1_at At4g11090 - - 1e-45 At4g08810 SUB1 O.I. H.G. S.X.
0.30 52.0 Ptp.6565.1.S1_s_at At4g11090 hypothetical protein - 5e-7 At3g15480 unknown protein O.I. H.G. S.X.
0.29 50.5 PtpAffx.148282.1.S1_s_at At4g11090 tubulin alpha-1 chain - 1e-135 At1g04820 TUA4 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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