Co-expression analysis

Gene ID	1606871_at
Gene name	hypothetical protein LOC100265666
Homology with Arabidopsis	Similar to At4g11090: unknown protein (HF=1e-3)
Module size	6 genes
NF	0.35
%ile	51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.97	1606871_at	CB970216	hypothetical protein LOC100265666	-	1e-3	At4g11090	unknown protein	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.96	1616046_at	CD012880	-	-	9e-6	At1g08280	glycosyl transferase family 29 protein / sialyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.97	1616682_at	CF512457	hypothetical protein LOC100266059	-	9e-37	At4g18030	dehydration-responsive family protein	O.I.	H.G.	S.X.	Please select
0.22	25.6	0.97	1606682_at	BQ796871	hypothetical protein LOC100265566	-	2e-18	At2g30460	-	O.I.	H.G.	S.X.	Please select
0.19	20.9	0.97	1608494_at	CF603964	hypothetical protein LOC100253260	-	1e-76	At2g34560	katanin, putative	O.I.	H.G.	S.X.	Please select
0.16	16.7	0.97	1608307_at	CF209143	hypothetical protein LOC100247674	-	2e-1	At2g33300	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.1	99.4	GSM287904	Red soft berry C31 from plant 2 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
6.8	99.0	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
5.5	98.4	GSM287901	Red soft berry C16 from plant 1 cluster distal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
4.3	97.2	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.3	97.2	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.9	96.6	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.9	96.6	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM436422	V. riparia (VR, PI588259) SD, 13h 21 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
3.5	95.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

A co-expression module including the barley gene, Contig21789_at, orthologous to the query gene, 1606871_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig21789_at	At4g11090	-	-	3e-1	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.73	88.7	HV04B19u_at	At4g11090	-	-	9e-1	At5g55507	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig16356_at	At4g11090	-	-	2e+0	At5g19200	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig18983_at	At4g11090	-	-	1e+0	At2g18465	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.42	55.2	EBem10_SQ003_N11_at	At4g11090	-	-	3e+0	At3g06770	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	Contig1846_s_at	At4g11090	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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