Co-expression analysis

Gene ID 1606871_at
Gene name hypothetical protein LOC100265666
Homology with ArabidopsisSimilar to At4g11090: unknown protein (HF=1e-3)
Module size 6 genes
NF 0.35
%ile 51.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7189.50.971606871_atCB970216hypothetical protein LOC100265666-1e-3At4g11090unknown proteinO.I.H.G.S.X.
0.7189.50.961616046_atCD012880--9e-6At1g08280glycosyl transferase family 29 protein / sialyltransferase family proteinO.I.H.G.S.X.
0.5577.30.971616682_atCF512457hypothetical protein LOC100266059-9e-37At4g18030dehydration-responsive family proteinO.I.H.G.S.X.
0.2225.60.971606682_atBQ796871hypothetical protein LOC100265566-2e-18At2g30460-O.I.H.G.S.X.
0.1920.90.971608494_atCF603964hypothetical protein LOC100253260-1e-76At2g34560katanin, putativeO.I.H.G.S.X.
0.1616.70.971608307_atCF209143hypothetical protein LOC100247674-2e-1At2g33300-O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
8.199.4GSM287904Red soft berry C31 from plant 2 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
6.899.0GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
5.598.4GSM287901Red soft berry C16 from plant 1 cluster distal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
4.397.2GSM436425V. riparia (VR, PI588259) SD, 13h 28 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
4.397.2GSM287897Red soft berry C29 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.996.6GSM436424V. riparia (VR, PI588259) SD, 13h 28 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.996.6GSM436426V. riparia (VR, PI588259) SD, 13h 28 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.796.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM436422V. riparia (VR, PI588259) SD, 13h 21 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
3.595.7GSM287898Red soft berry B14 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At4g11090, orthologous to the query gene, 1606871_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At4g11090826710unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PO.I.H.G.S.X.
0.4862.5At3g46820823835TOPP5Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.4862.5At5g39360833932EDL2 (EID1-like 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.H.G.S.X.
0.4761.2At1g27600839652glycosyl transferase family 43 proteinF:transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOO.I.H.G.S.X.
0.4659.8At4g15415827211ATB' GAMMAB' regulatory subunit of PP2A (AtB'gamma)O.I.H.G.S.X.
0.4558.3At5g47310834778unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.H.G.S.X.
0.4457.2At2g40410818634Ca(2+)-dependent nuclease, putativeF:nuclease activity;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.H.G.S.X.
0.4457.2At4g37880829944protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.4457.2At5g63870836507PP7 (SERINE/THREONINE PHOSPHATASE 7)Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.O.I.H.G.S.X.
0.4253.9At5g01460831815LMBR1 integral membrane family proteinF:unknown;P:unknown;C:membrane;MOFPO.I.H.G.S.X.
0.4152.4At4g28980829019cyclin-dependent kinase-activating kinase 1At / CDK-activating kinase 1At (CAK1)Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.O.I.H.G.S.X.
0.4152.4At3g53030824469SRPK4 (Ser/Arg-rich protein kinase 4)Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31.O.I.H.G.S.X.
0.4152.4At1g79975---O.I.H.G.S.X.
0.4152.4At3g07550819944F-box family protein (FBL12)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPFOBO.I.H.G.S.X.
0.4152.4At3g01340821216protein transport protein SEC13 family protein / WD-40 repeat family proteinF:nucleotide binding;P:intracellular protein transport, membrane budding;C:cellular_component unknown;MFBOPAO.I.H.G.S.X.
0.4050.8At2g40980818698-F:unknown;P:unknown;C:plasma membrane;BPOO.I.H.G.S.X.
0.4050.8At4g09580826542-F:unknown;P:biological_process unknown;C:endoplasmic reticulum;BOMPFAO.I.H.G.S.X.
0.4050.8At1g12820837838AFB3 (AUXIN SIGNALING F-BOX 3)F:auxin binding, ubiquitin-protein ligase activity;P:stamen development, pollen maturation, response to molecule of bacterial origin;C:cellular_component unknown;PMFOBO.I.H.G.S.X.
0.3948.4At1g17730838349VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)F:unknown;P:vesicle-mediated transport;C:cellular_component unknown;MPFOAO.I.H.G.S.X.
0.3948.4At3g06110819784MKP2 (MAPK PHOSPHATASE 2)Encodes a nuclear-localized MAP kinase phosphatase. Plants with reduced levels of MKP2 transcripts are hypersensitive to ozone and ozone-mediated activation of MPK3 and MPK6 is prolonged in these plants.O.I.H.G.S.X.
0.3948.4At3g50880824252HhH-GPD base excision DNA repair family proteinF:catalytic activity;P:DNA repair, base-excision repair;C:chloroplast;OBFPAO.I.H.G.S.X.
0.3948.4At3g29270822584ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:unknown;C:unknown;MPOO.I.H.G.S.X.
0.3948.4At5g18390831957pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFABO.I.H.G.S.X.
0.3846.7At4g38040829960exostosin family proteinF:catalytic activity;P:biological_process unknown;C:chloroplast, membrane;PMOBFVO.I.H.G.S.X.
0.3745.0At2g30980817649ASKdZeta (Arabidopsis SHAGGY-related protein kinase dZeta)Encodes a GSK3-like protein kinase. This protein can interact with the BZR1 protein involved in brassinosteroid-mediated signaling in a Y2H assay and promotes BZR1 phosphorylation in protoplasts.O.I.H.G.S.X.
0.3745.0At1g71900843521-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.H.G.S.X.
0.3643.6At1g17280838300UBC34 (ubiquitin-conjugating enzyme 34)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPVO.I.H.G.S.X.
0.3643.6At1g60430842338ARPC3 (actin-related protein C3)F:structural molecule activity;P:actin filament organization;C:Arp2/3 protein complex;MFOPO.I.H.G.S.X.
0.3643.6At3g54860824651vacuolar protein sorting protein, putativeHomologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.3643.6At2g22090816744UBP1 interacting protein 1a (UBA1a)encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus.O.I.H.G.S.X.
0.3643.6At2g23460816878XLG1 (EXTRA-LARGE G-PROTEIN 1)encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits.O.I.H.G.S.X.
0.3643.6At1g10940837637SNRK2.4 (SNF1-RELATED PROTEIN KINASE 2.4)Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute.O.I.H.G.S.X.
0.3541.6At3g25800822171PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)one of three genes encoding the protein phosphatase 2A regulatory subunitO.I.H.G.S.X.
0.3541.6At5g21040832228FBX2 (F-BOX PROTEIN 2)Encodes an F-box containing protein that interacts physically with BHLH32 and appears to be involved in mediating phosphate starvation responses.O.I.H.G.S.X.
0.3541.6At4g34215829570hydrolaseEncodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds.O.I.H.G.S.X.
0.3439.8At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.H.G.S.X.
0.3439.8At4g35870829741-F:molecular_function unknown;P:protein targeting to vacuole;C:membrane;MPFOO.I.H.G.S.X.
0.3439.8At2g29900817540presenilin family proteinF:molecular_function unknown;P:intracellular signaling cascade;C:integral to membrane, membrane;MOPAO.I.H.G.S.X.
0.3439.8At1g56590842113clathrin adaptor complexes medium subunit family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:clathrin vesicle coat, clathrin adaptor complex;MFOPO.I.H.G.S.X.
0.3439.8At1g69980843335unknown proteinF:unknown;P:unknown;C:endomembrane system;PO.I.H.G.S.X.
0.3338.1At4g05000825842VPS28-2F:transporter activity;P:transport;C:ESCRT I complex;MFPOO.I.H.G.S.X.
0.3338.1At3g01150821129PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.O.I.H.G.S.X.
0.3338.1At3g19460821480reticulon family protein (RTNLB11)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPOFO.I.H.G.S.X.
0.3338.1At3g27320822351hydrolaseF:hydrolase activity;P:metabolic process;C:unknown;BOPFMAVO.I.H.G.S.X.
0.3338.1At1g22020838807SHM6 (serine hydroxymethyltransferase 6)Encodes a putative serine hydroxymethyltransferase.O.I.H.G.S.X.
0.3338.1At2g44530819061ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putativeF:magnesium ion binding, ribose phosphate diphosphokinase activity;P:cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process;C:chloroplast;OBMFAPVO.I.H.G.S.X.
0.3338.1At3g42790823316AL3 (ALFIN-LIKE 3)AL3 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.3338.1At1g54390841881PHD finger protein-relatedING2 encodes a member of the Inhibitor of Growth family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.O.I.H.G.S.X.
0.3235.7At3g56740824841ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOBO.I.H.G.S.X.
0.3235.7At2g01270814654AtQSOX2 (quiescin-sulfhydryl oxidase 2)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain.O.I.H.G.S.X.
0.3235.7At1g54115841851CCX4 (CATION CALCIUM EXCHANGER 4)Involved in cation (Na and K) homeostasis.O.I.H.G.S.X.
0.3235.7At5g57460835851unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, chloroplast;MPOFO.I.H.G.S.X.
0.3235.7At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.3235.7At4g33890829532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOO.I.H.G.S.X.
0.3133.8At5g18190831937protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MBOPFVAO.I.H.G.S.X.
0.3133.8At5g46190834661KH domain-containing proteinF:RNA binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBO.I.H.G.S.X.
0.3133.8At3g29160822566AKIN11 (Arabidopsis SNF1 kinase homolog 11)encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1.O.I.H.G.S.X.
0.2930.3At2g05170815065ATVPS11Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis.O.I.H.G.S.X.
0.2930.3At2g27600817306SKD1 (SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1)Encodes a SKD1 (Suppressor of K+ Transport Growth Defect1) homolog. Localized to the cytoplasm and to multivesicular endosomes. Involved in multivesicular endosome function.O.I.H.G.S.X.
0.2930.3At1g35470840440SPla/RYanodine receptor (SPRY) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.H.G.S.X.
0.2930.3At3g24350822024SYP32 (SYNTAXIN OF PLANTS 32)member of Glycoside Hydrolase Family 17O.I.H.G.S.X.
0.2830.3At4g38640830020choline transporter-relatedF:unknown;P:unknown;C:unknown;MOFPABO.I.H.G.S.X.
0.2830.3At5g41950834200bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMBFPAVO.I.H.G.S.X.
0.2830.3At1g16010838171magnesium transporter CorA-like family protein (MRS2-1)F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBAO.I.H.G.S.X.
0.2830.3At5g49830835046-F:unknown;P:unknown;C:plasma membrane;MFPOVO.I.H.G.S.X.
0.2830.3At4g15475827219F-box family protein (FBL4)F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFBVO.I.H.G.S.X.
0.2726.2At3g17750821043protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAO.I.H.G.S.X.
0.2726.2At1g14140837973mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.H.G.S.X.
0.2726.2At3g05090819671transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFOBPAVO.I.H.G.S.X.
0.2726.2At1g10430837583PP2A-2Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A.O.I.H.G.S.X.
0.2726.2At2g20190816539CLASP (CLIP-ASSOCIATED PROTEIN)Encodes a microtubule-associated protein that is involved in both cell division and cell expansion. It likely promotes microtubule stability.O.I.H.G.S.X.
0.2726.2At1g13320837892PP2AA3 (PROTEIN PHOSPHATASE 2A SUBUNIT A3)one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A)O.I.H.G.S.X.
0.2624.4At1g32050840097secretory carrier membrane protein (SCAMP) family proteinF:transmembrane transporter activity;P:protein transport;C:mitochondrion, plasma membrane;MPOFO.I.H.G.S.X.
0.2624.4At3g61180825290zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:plasma membrane;PMOFVBO.I.H.G.S.X.
0.2624.4At3g15410820780leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;MPBOFAVO.I.H.G.S.X.
0.2522.6At3g28710822502H+-transporting two-sector ATPase, putativeF:hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:vacuolar membrane, plasma membrane, vacuole, plant-type vacuole;MFOPABO.I.H.G.S.X.
0.2522.6At2g28390817387SAND family proteinF:unknown;P:unknown;C:chloroplast;MFOBPAVO.I.H.G.S.X.
0.2522.6At5g28850833004calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MOPFO.I.H.G.S.X.
0.2522.6At3g20970821647NFU4Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion.O.I.H.G.S.X.
0.2522.6At5g09740830834HAM2 (histone acetyltransferase of the MYST family 2)Encodes an enzyme with histone acetyltransferase activity. HAM2 primarily acetylate histone H4, but also display some ability to acetylate H3. Prior acetylation of lysine 5 on histone H4 reduces radioactive acetylation by either HAM2.O.I.H.G.S.X.
0.2420.7At2g40280818620dehydration-responsive family proteinF:unknown;P:biological_process unknown;C:Golgi apparatus;PBFMOAO.I.H.G.S.X.
0.2420.7At5g59160836034TOPP2Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers.O.I.H.G.S.X.
0.2319.3At4g22750828372zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.H.G.S.X.
0.2217.5At4g24560828558UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16)Encodes a ubiquitin-specific protease. There is no evidence for a phenotype in ubp16-1 mutants, however, double mutant analysis with ubp15 mutants reveals a role for UBP16 in plant development and cell proliferation.O.I.H.G.S.X.
0.2217.5At1g19120838495small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:biological_process unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFPOAO.I.H.G.S.X.
0.2217.5At5g02850831762hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBO.I.H.G.S.X.
0.2115.8At1g04910839373unknown proteinF:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;PO.I.H.G.S.X.
0.2014.4At3g05280819692integral membrane Yip1 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.2014.4At5g58060835918YKT61member of YKT6 Gene FamilyO.I.H.G.S.X.
0.1912.7At5g09810830841ACT7 (ACTIN 7)Member of Actin gene family.Mutants are defective in germination and root growth.O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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