Co-expression analysis

Gene ID	1606798_at
Gene name	glutamine synthetase
Homology with Arabidopsis	Similar to At3g17820: ATGSKB6 (HF=5e-42)
Module size	6 genes
NF	0.60
%ile	86.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	57.7	0.95	1606798_at	CF209842	glutamine synthetase	-	5e-42	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.96	1607656_at	CF514698	hypothetical protein LOC100252782	-	2e+0	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.94	1621385_at	CF206496.1	-	-	2e+0	At4g04630	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.94	1614582_at	BQ799084	hypothetical protein LOC100265011	-	3e-4	At1g08450	CRT3 (CALRETICULIN 3)	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.97	1610660_at	CB008720	hypothetical LOC100263492	-	1e+0	At2g20700	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.97	1618508_at	CF208698	hypothetical protein LOC100254705 /// hypothetical protein LOC100260176 /// hypothetical protein LOC100263586 /// hypothetical protein LOC100266529	-	4e+0	At2g18876	unknown protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.9	98.6	GSM147690	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 0 h post inoculation	19
3.8	96.4	GSM147675	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	4
3.8	96.4	GSM147673	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	2
3.5	95.7	GSM147676	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 24 h post inoculation	5
2.7	93.0	GSM299462	D_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147672	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	1
2.6	92.5	GSM147738	Vitis aestivalis 'Norton ' mock inoculated at 0 h post inoculation	67
2.6	92.5	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52
2.5	91.9	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.4	91.3	GSM147691	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 4 h post inoculation	20

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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