Co-expression analysis

Gene ID	1606787_at
Gene name	hypothetical protein LOC100258674
Homology with Arabidopsis	Similar to At1g13620: unknown protein (HF=4e-1)
Module size	14 genes
NF	0.35
%ile	51.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	0.96	1606787_at	CF373239	hypothetical protein LOC100258674	-	4e-1	At1g13620	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	66.5	0.97	1620282_at	CB977969	hypothetical protein LOC100243325	-	5e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1617299_at	CD801559	hypothetical protein LOC100249941	-	3e-31	At2g46225	ABIL1 (Abi-1-like 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1616391_s_at	CD802476	hypothetical protein LOC100261930	-	3e-51	At2g27960	CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.97	1607335_at	CD801694	hypothetical protein LOC100245908	-	1e-20	At3g06050	PRXIIF (PEROXIREDOXIN IIF)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.98	1614475_at	CF609346	hypothetical protein LOC100263178	-	9e-18	At5g43930	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.97	1622075_at	CD799862	-	-	2e-16	At5g20990	B73	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.97	1614413_at	CF211310	hypothetical protein LOC100242392	-	9e-9	At5g24810	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1622610_at	CF413855	hypothetical protein LOC100264665	-	5e-6	At5g15090	VDAC3 (VOLTAGE DEPENDENT ANION CHANNEL 3)	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.98	1620220_at	CB345823	hypothetical protein LOC100243115	-	7e-46	At5g54760	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1615943_at	CB971749	hypothetical protein LOC100266273	-	5e-14	At1g51980	mitochondrial processing peptidase alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1620873_at	CB339891	hypothetical protein LOC100247687	-	1e-15	At2g37660	binding / catalytic/ coenzyme binding	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1618057_at	CF207962	hypothetical protein LOC100265221	-	4e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	24.0	0.97	1611911_at	CF212492	hypothetical protein LOC100266461	-	1e-121	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.8	96.4	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM436350	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436372	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
1.8	86.0	GSM436347	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.7	84.7	GSM436346	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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