Co-expression analysis

Gene ID	1606748_at
Gene name
Homology with Arabidopsis	Similar to At4g16520: ATG8F (autophagy 8f) (HF=4e+0)
Module size	6 genes
NF	0.18
%ile	26.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.79	1606748_at	CB344298	-	-	4e+0	At4g16520	ATG8F (autophagy 8f)	O.I.	H.G.	S.X.	Please select
0.40	57.7	0.98	1614782_at	CB970893	hypothetical protein LOC100242015	-	2e-1	At4g18070	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.97	1613688_at	BQ798030	hypothetical protein LOC100248745	-	4e+0	At2g41230	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	30.5	0.98	1618747_at	CF212116	hypothetical protein LOC100261543	-	7e-8	At1g16460	ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2)	O.I.	H.G.	S.X.	Please select
0.10	10.3	0.93	1613383_at	CB922386	-	-	5e-68	At5g45390	CLPP4 (CLP PROTEASE P4)	O.I.	H.G.	S.X.	Please select
0.07	7.8	0.98	1612412_at	CB005149	hypothetical protein LOC100259477	-	5e-104	At3g02090	mitochondrial processing peptidase beta subunit, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.0	98.0	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
3.3	95.2	GSM147699	Vitis vinifera 'Cabernet sauvignon' mock inoculated at 12 h post inoculation	28
2.5	91.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.1	89.1	GSM147685	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	14
2.1	89.1	GSM147684	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	13
2.1	89.1	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.0	88.2	GSM147723	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	52

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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