Co-expression analysis

Gene ID 1606725_at
Gene name
Homology with ArabidopsisSimilar to At3g47180: zinc finger (C3HC4-type RING finger) family protein (HF=2e+0)
Module size 6 genes
NF 0.03
%ile 7.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.80.781606725_atCB342959--2e+0At3g47180zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.1313.30.951617998_atBQ797178R2R3 Myb transcription factor C2 repressor motif protein-6e-4At2g16720MYB7 (MYB DOMAIN PROTEIN 7)O.I.H.G.S.X.
0.045.20.941607070_atCB347331hypothetical protein LOC100252611-5e-32At5g15450CLPB3 (CASEIN LYTIC PROTEINASE B3)O.I.H.G.S.X.
0.034.20.961614622_atCB910360hypothetical protein LOC100258256-3e-2At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.H.G.S.X.
0.012.10.941619308_atBQ795842hypothetical protein LOC100251904 /// hypothetical protein LOC100248513-4e-13At4g13010oxidoreductase, zinc-binding dehydrogenase family proteinO.I.H.G.S.X.
0.012.10.941607488_atCF373706hypothetical protein LOC100245682-1e+0At3g06985LCR44 (Low-molecular-weight cysteine-rich 44)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.096.7GSM147681Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation10Link to GEO
3.896.4GSM147743Vitis aestivalis 'Norton ' mock inoculated at 48 h post inoculation72Link to GEO
3.495.5GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.294.9GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
3.194.6GSM147742Vitis aestivalis 'Norton ' mock inoculated at 24 h post inoculation71Link to GEO
2.993.8GSM287881Green soft berry B10 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.993.8GSM287866Green hard berry B21 from plant 1 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM287903Red soft berry A7 from plant 2 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.692.5GSM287873Green hard berry B9 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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