Co-expression analysis

Gene ID	1606693_at
Gene name	hypothetical protein LOC100265371
Homology with Arabidopsis	Similar to At5g05670: signal recognition particle binding (HF=3e-43)
Module size	6 genes
NF	0.51
%ile	76.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	93.6	0.98	1606693_at	CF510824	hypothetical protein LOC100265371	-	3e-43	At5g05670	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1620044_s_at	CF209634	hypothetical protein LOC100247307	-	7e-8	At5g61510	NADP-dependent oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.55	77.3	0.98	1612637_at	CB982953	hypothetical protein LOC100259097	-	2e-3	At5g13390	NEF1 (NO EXINE FORMATION 1)	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.99	1610114_at	CD003699	similar to SPla/RYanodine receptor (SPRY) domain-containing protein	-	8e+0	At5g51710	KEA5	O.I.	H.G.	S.X.	Please select
0.38	53.6	0.99	1620213_at	CB981229	hypothetical protein LOC100252268	-	5e-1	At1g13600	AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)	O.I.	H.G.	S.X.	Please select
0.27	34.0	0.99	1610193_at	CF214569	hypothetical protein LOC100242819	-	1e-53	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
5.6	98.4	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
4.9	97.9	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
4.4	97.3	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.7	96.2	GSM436406	V. riparia (VR, PI588259) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
3.4	95.5	GSM436408	V. riparia (VR, PI588259) LD, 15h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM436425	V. riparia (VR, PI588259) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM436426	V. riparia (VR, PI588259) SD, 13h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM436424	V. riparia (VR, PI588259) SD, 13h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.9	87.2	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
1.8	86.0	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage