Co-expression analysis

Gene ID	1606682_at
Gene name	hypothetical protein LOC100265566
Homology with Arabidopsis	Similar to At2g30460: - (HF=2e-18)
Module size	7 genes
NF	0.37
%ile	53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	79.4	0.97	1606682_at	BQ796871	hypothetical protein LOC100265566	-	2e-18	At2g30460	-	O.I.	H.G.	S.X.	Please select
0.53	75.2	0.98	1613856_at	CD012158	hypothetical protein LOC100264793	-	4e-89	At1g31420	FEI1 (FEI 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1619148_at	CF513297	hypothetical protein LOC100263958	-	6e-2	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1606694_at	CB977917	hypothetical protein LOC100254974	-	1e+0	At4g14410	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.32	43.1	0.98	1621139_at	CB982951	hypothetical protein LOC100262947	-	3e-9	At5g08390	-	O.I.	H.G.	S.X.	Please select
0.29	37.7	0.98	1608358_at	CD004170	hypothetical protein LOC100266977	-	9e-27	At4g27585	band 7 family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1607646_at	CB977484	hypothetical protein LOC100244584	-	7e-59	At3g49870	ATARLA1C (ADP-ribosylation factor-like A1C)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.7	96.2	GSM436354	Seyval (SV, Seyve Villard 5-276) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.8	93.4	GSM287899	Red soft berry C13 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM436429	V. riparia (VR, PI588259) SD, 13h 42 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.7	93.0	GSM436427	V. riparia (VR, PI588259) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.6	92.5	GSM436428	V. riparia (VR, PI588259) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.4	91.3	GSM287900	Red soft berry C15 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM287898	Red soft berry B14 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.3	90.7	GSM147717	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 12 h post inoculation	46
2.2	89.9	GSM287866	Green hard berry B21 from plant 1 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.2	89.9	GSM287897	Red soft berry C29 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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