Co-expression analysis

Gene ID	1606658_at
Gene name	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803
Homology with Arabidopsis	Similar to At2g22870: EMB2001 (embryo defective 2001) (HF=5e-26)
Module size	6 genes
NF	0.33
%ile	48.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	90.8	0.98	1606658_at	CB981496	hypothetical protein LOC100242421 /// hypothetical protein LOC100249803	-	5e-26	At2g22870	EMB2001 (embryo defective 2001)	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.98	1613774_s_at	CB920222	-	-	3e-2	At4g00070	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	0.98	1612084_s_at	BQ795572	-	-	1e+0	At1g27740	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	0.98	1615906_at	CF208812	hypothetical protein LOC100248563	-	3e-3	At2g47410	nucleotide binding	O.I.	H.G.	S.X.	Please select
0.23	27.5	0.98	1621212_at	BQ794170	hypothetical protein LOC100260205	-	7e-5	At4g12790	ATP-binding family protein	O.I.	H.G.	S.X.	Please select
0.18	19.4	0.98	1620460_at	BQ792558	hypothetical protein LOC100263447	-	3e-7	At3g54670	TTN8 (TITAN8)	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.8	93.4	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.7	93.0	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.3	90.7	GSM147741	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	70
2.2	89.9	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.2	89.9	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.2	89.9	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147729	Vitis aestivalis 'Norton ' mock inoculated at 12 h post inoculation	58
2.1	89.1	GSM322361	genotype: Chardonnay - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.1	89.1	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.1	89.1	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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