Co-expression analysis

Gene ID	1606625_at
Gene name	hypothetical protein LOC100257850
Homology with Arabidopsis	Similar to At2g43590: chitinase, putative (HF=1e-1)
Module size	14 genes
NF	0.48
%ile	72.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	83.2	0.92	1606625_at	CF603972	hypothetical protein LOC100257850	-	1e-1	At2g43590	chitinase, putative	O.I.	H.G.	S.X.	Please select
0.64	84.7	0.92	1621378_at	BQ794342	hypothetical protein LOC100260851	-	2e-84	At2g35390	ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI)	O.I.	H.G.	S.X.	Please select
0.58	79.8	0.92	1618583_s_at	CF607489	-	-	6e+0	At5g64900	PROPEP1	O.I.	H.G.	S.X.	Please select
0.52	73.9	0.94	1622596_s_at	CD800869	hypothetical protein LOC100255931	-	1e-3	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	72.7	0.92	1614976_at	AJ289866.2	aquaporin TIP2;1	-	4e-8	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.49	69.3	0.92	1615208_at	CF603150	hypothetical protein LOC100255070	-	3e-19	At5g22850	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.93	1618981_at	BQ797430	hypothetical protein LOC100261093	-	2e-35	At5g14780	FDH (FORMATE DEHYDROGENASE)	O.I.	H.G.	S.X.	Please select
0.43	61.5	0.92	1611572_at	CF373471	hypothetical protein LOC100255220	-	1e-1	At5g58530	glutaredoxin family protein	O.I.	H.G.	S.X.	Please select
0.42	60.1	0.94	1609684_at	CB009168	similar to pyruvate decarboxylase	-	3e-41	At5g54960	PDC2 (pyruvate decarboxylase-2)	O.I.	H.G.	S.X.	Please select
0.39	54.9	0.94	1619798_at	CF206345.1	-	-	6e+0	At5g50740	metal ion binding	O.I.	H.G.	S.X.	Please select
0.36	50.7	0.96	1614430_at	CD800869	hypothetical protein LOC100255931	-	1e-3	At5g57060	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	0.96	1619873_at	CF404612	hypothetical protein LOC100264420	-	2e-9	At5g42250	alcohol dehydrogenase, putative	O.I.	H.G.	S.X.	Please select
0.34	46.8	0.95	1609766_at	CF214737	hypothetical protein LOC100255070	-	4e+0	At5g22850	aspartyl protease family protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	0.94	1621336_at	CD798795	hypothetical protein LOC100254009	-	1e-84	At4g08390	SAPX (STROMAL ASCORBATE PEROXIDASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.6	98.9	GSM287869	Green hard berry C3 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
3.0	94.2	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.7	93.0	GSM147740	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	69
2.4	91.3	GSM147710	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	39
2.3	90.7	GSM147721	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation	50
2.1	89.1	GSM147728	Vitis aestivalis 'Norton ' mock inoculated at 8 h post inoculation	57
2.0	88.2	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
1.9	87.2	GSM299456	C_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
1.9	87.2	GSM436394	V. riparia (VR, PI588259) LD, 15h 7 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.8	86.0	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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