Co-expression analysis

Gene ID	1606585_at
Gene name	hypothetical protein LOC100250401
Homology with Arabidopsis	Similar to At1g11860: aminomethyltransferase, putative (HF=3e-27)
Module size	6 genes
NF	0.91
%ile	99.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.5	0.99	1606585_at	CB339560	hypothetical protein LOC100250401	-	3e-27	At1g11860	aminomethyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1611476_at	CB342522	hypothetical protein LOC100248815	-	1e-16	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1609784_s_at	CA813947	hypothetical protein LOC100261841	-	9e-22	At1g23740	oxidoreductase, zinc-binding dehydrogenase family protein	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	1612645_at	CB344170	hypothetical protein LOC100251062	-	2e-6	At4g09650	ATPD (ATP SYNTHASE DELTA-SUBUNIT GENE)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1614290_at	CB342951	hypothetical protein LOC100253525	-	1e-73	At3g48420	haloacid dehalogenase-like hydrolase family protein	O.I.	H.G.	S.X.	Please select
0.77	92.3	0.99	1609310_at	CB342641	hypothetical protein LOC100249576	-	2e-177	At1g56190	phosphoglycerate kinase, putative	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.0	96.7	GSM436423	V. riparia (VR, PI588259) SD, 13h 21 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
3.0	94.2	GSM147739	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	68
2.7	93.0	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.7	93.0	GSM147720	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 0 h post inoculation	49
2.7	93.0	GSM436390	V. riparia (VR, PI588259) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.5	91.9	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.4	91.3	GSM287892	Pink soft berry C11 from plant 1 cluster distal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.4	91.3	GSM147722	Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	51
2.3	90.7	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.0	88.2	GSM436413	V. riparia (VR, PI588259) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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