Co-expression analysis

Gene ID 1606574_at
Gene name
Homology with ArabidopsisSimilar to At2g47520: AP2 domain-containing transcription factor, putative (HF=2e-1)
Module size 7 genes
NF 0.05
%ile 11.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9299.00.811606574_atCF415292--2e-1At2g47520AP2 domain-containing transcription factor, putativeO.I.H.G.S.X.
0.099.40.941609624_atCK138167.1--2e-27At5g19855unknown proteinO.I.H.G.S.X.
0.045.20.931615092_atCB349360similar to ring domain containing protein-1e-8At4g03510RMA1O.I.H.G.S.X.
0.045.20.961615317_atCA809272hypothetical protein LOC100266100-2e-9At3g51510unknown proteinO.I.H.G.S.X.
0.034.20.881617038_atCA814579--2e+0At5g02050mitochondrial glycoprotein family protein / MAM33 family proteinO.I.H.G.S.X.
0.034.20.931608988_atCB345849hypothetical protein LOC100249728-1e+0At3g50560short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.023.20.941619110_atCF404158hypothetical protein LOC100267390-4e-4At2g30170catalyticO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.591.9GSM436428V. riparia (VR, PI588259) SD, 13h 42 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.390.7GSM436429V. riparia (VR, PI588259) SD, 13h 42 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.289.9GSM436427V. riparia (VR, PI588259) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM436385Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
2.088.2GSM322362genotype: Chardonnay - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM299458D_ni_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM287900Red soft berry C15 from plant 1 cluster distal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
1.886.0GSM299462D_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
1.886.0GSM147715Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation44Link to GEO
1.784.7GSM436406V. riparia (VR, PI588259) LD, 15h 42 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



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