CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1606505_at

Gene name hypothetical protein LOC100257948
Homology with Arabidopsis Similar to At3g21570: unknown protein (HF=3e+0)

Module size 7 genes

NF 0.71

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1606505_at CB970568 hypothetical protein LOC100257948 - 3e+0 At3g21570 unknown protein O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-Vvi-X03453-2_s_at - - - O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-r2-P1-cre-3_at - - - O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-r2-P1-cre-5_at - - - O.I. H.G. S.X.
0.73 90.8 1.00 AFFX-CreX-3_at - - - O.I. H.G. S.X.
0.61 83.2 0.99 AFFX-CreX-5_at - - - O.I. H.G. S.X.
0.47 67.7 0.98 AFFX-r2-Ec-bioD-5_at - - - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
2.3 90.7 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.1408.1.A1_s_at, orthologous to the query gene, 1606505_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.65 88.6 PtpAffx.1408.1.A1_s_at At3g21570 hypothetical protein - 6e-4 At3g21570 unknown protein O.I. H.G. S.X.
0.58 84.2 PtpAffx.1258.1.S1_s_at At3g21570 actin 1 - 5e-138 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.56 83.9 Ptp.6486.1.S1_s_at At3g21570 actin 1 - 0 At1g49240 ACT8 (ACTIN 8) O.I. H.G. S.X.
0.42 68.6 PtpAffx.82658.1.A1_at At3g21570 - - 4e+0 At3g61660 unknown protein O.I. H.G. S.X.
0.33 57.5 Ptp.1497.2.S1_x_at At3g21570 s-adenosylmethionine synthetase 5 - 3e-179 At1g02500 SAM1 (S-ADENOSYLMETHIONINE SYNTHETASE 1) O.I. H.G. S.X.
0.32 55.2 PtpAffx.200412.1.S1_x_at At3g21570 hypothetical protein - 0 At4g11380 beta-adaptin, putative O.I. H.G. S.X.
0.32 55.2 Ptp.5047.1.S1_at At3g21570 - - 2e-29 At4g24290 - O.I. H.G. S.X.
0.31 53.7 PtpAffx.200527.1.S1_s_at At3g21570 hypothetical protein - 0 At3g15980 coatomer protein complex, subunit beta 2 (beta prime), putative O.I. H.G. S.X.
0.31 53.7 PtpAffx.1258.4.S1_s_at At3g21570 actin 1 /// actin 9 - 0 At5g09810 ACT7 (ACTIN 7) O.I. H.G. S.X.
0.26 45.2 PtpAffx.14653.2.S1_a_at At3g21570 hypothetical protein - 7e-8 At5g37510 EMB1467 (embryo defective 1467) O.I. H.G. S.X.
0.25 43.6 PtpAffx.73338.3.S1_s_at At3g21570 hypothetical protein - 9e-30 At2g30110 ATUBA1 O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays

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