Co-expression analysis

Gene ID	1606505_at
Gene name	hypothetical protein LOC100257948
Homology with Arabidopsis	Similar to At3g21570: unknown protein (HF=3e+0)
Module size	7 genes
NF	0.71
%ile	94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	0.98	1606505_at	CB970568	hypothetical protein LOC100257948	-	3e+0	At3g21570	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	AFFX-Vvi-X03453-2_s_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	AFFX-r2-P1-cre-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	AFFX-r2-P1-cre-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.73	90.8	1.00	AFFX-CreX-3_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.61	83.2	0.99	AFFX-CreX-5_at		-	-			-	O.I.	H.G.	S.X.	Please select
0.47	67.7	0.98	AFFX-r2-Ec-bioD-5_at		-	-			-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
3.3	95.2	GSM322362	genotype: Chardonnay - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.6	92.5	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.3	90.7	GSM436362	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.3	90.7	GSM147680	Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation	9
2.3	90.7	GSM436405	V. riparia (VR, PI588259) LD, 15h 28 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436386	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436364	Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436411	V. riparia (VR, PI588259) SD, 13h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
2.2	89.9	GSM436356	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the barley gene, HW07G01u_x_at, orthologous to the query gene, 1606505_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	HW07G01u_x_at	At3g21570	-	-	6e-1	At5g49120	senescence-associated protein-related	O.I.	H.G.	S.X.	Please select
0.13	11.6	HF08O15r_at	At3g21570	-	-	9e+0	At4g23090	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	5.8	HU08O21u_x_at	At3g21570	-	-	7e-1	At1g45000	26S proteasome regulatory complex subunit p42D, putative	O.I.	H.G.	S.X.	Please select
0.01	1.1	rbaal28o12_x_at	At3g21570	-	-	1e+0	At2g13570	NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7)	O.I.	H.G.	S.X.	Please select
0.01	1.1	Contig4591_at	At3g21570	-	-	4e-2	At4g22890	PGR5-LIKE A	O.I.	H.G.	S.X.	Please select
0.00	0.2	HT07O19u_s_at	At3g21570	-	-	2e+0	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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