CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID 1606505_at

Gene name hypothetical protein LOC100257948
Homology with Arabidopsis Similar to At3g21570: unknown protein (HF=3e+0)

Module size 7 genes

NF 0.71

%ile 94.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 0.98 1606505_at CB970568 hypothetical protein LOC100257948 - 3e+0 At3g21570 unknown protein O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-Vvi-X03453-2_s_at - - - O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-r2-P1-cre-3_at - - - O.I. H.G. S.X.
0.73 90.8 0.99 AFFX-r2-P1-cre-5_at - - - O.I. H.G. S.X.
0.73 90.8 1.00 AFFX-CreX-3_at - - - O.I. H.G. S.X.
0.61 83.2 0.99 AFFX-CreX-5_at - - - O.I. H.G. S.X.
0.47 67.7 0.98 AFFX-r2-Ec-bioD-5_at - - - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
3.3 95.2 GSM322362 genotype: Chardonnay - disease type: Bois Noir infected - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.6 92.5 GSM322370 genotype: Incrocio Manzoni - disease type: Healthy - rep2 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.5 91.9 GSM322369 genotype: Incrocio Manzoni - disease type: Healthy - rep1 GSE12842 Gene expression in grapevine in response to Bois noir infection
2.3 90.7 GSM436362 Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.3 90.7 GSM147680 Vitis vinifera 'Cabernet sauvignon' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation 9
2.3 90.7 GSM436405 V. riparia (VR, PI588259) LD, 15h 28 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436386 Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436364 Seyval (SV, Seyve Villard 5-276) LD, 15h 42 days - rep1 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436411 V. riparia (VR, PI588259) SD, 13h 1 days - rep3 GSE17502 Photoperiod regulation of grape bud dormancy
2.2 89.9 GSM436356 Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep2 GSE17502 Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g21570, orthologous to the query gene, 1606505_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g21570 821711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.57 73.8 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM O.I. H.G. S.X.
0.55 70.6 At1g61290 842423 SYP124 (SYNTAXIN OF PLANTS 124) member of SYP12 Gene Family O.I. H.G. S.X.
0.53 68.6 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA O.I. H.G. S.X.
0.40 50.8 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA O.I. H.G. S.X.
0.27 26.2 At2g43230 818924 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. H.G. S.X.
0.25 22.6 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA O.I. H.G. S.X.
0.23 19.3 At5g39400 833936 PTEN1 F:phosphatase activity;P:N-terminal protein myristoylation, pollen development;C:cellular_component unknown;MOFPBA O.I. H.G. S.X.
0.16 8.8 At3g17980 821323 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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