Co-expression analysis

Gene ID 1606458_at
Gene name hypothetical protein LOC100251697
Homology with ArabidopsisSimilar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=4e-11)
Module size 6 genes
NF 0.83
%ile 98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5577.30.991606458_atBQ792397hypothetical protein LOC100251697-4e-11At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.8394.60.991614138_atCA815957hypothetical protein LOC100254839-3e-14At1g68590plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putativeO.I.H.G.S.X.
0.8394.60.991616390_atCF211469hypothetical protein LOC100248042-1e-41At3g1312030S ribosomal protein S10, chloroplast, putativeO.I.H.G.S.X.
0.8093.60.991608691_atCB345817hypothetical protein LOC100248623-6e-27At1g78630emb1473 (embryo defective 1473)O.I.H.G.S.X.
0.8093.60.991621569_atCD801894hypothetical protein LOC100257626-4e-7At3g27850RPL12-C (ribosomal protein l12-c)O.I.H.G.S.X.
0.6787.90.991620854_atCA818411hypothetical protein LOC100258321-7e-12At1g29070ribosomal protein L34 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.997.9GSM322368genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
4.897.8GSM299457C_i_rep2GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
4.697.6GSM322367genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
3.495.5GSM299453B_i_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
3.094.2GSM147727Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation56Link to GEO
3.094.2GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.993.8GSM287885Green soft berry A22 from plant 2 cluster proximal position, biological rep 1GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.793.0GSM299461C_ni_rep1GSE11857Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genesLink to GEO
2.591.9GSM287882Green soft berry A21 from plant 1 cluster proximal position, biological rep 2GSE11406Expression data in individual grape berries during ripening initationLink to GEO
2.591.9GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.53128.1.S1_at, orthologous to the query gene, 1606458_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7393.6PtpAffx.53128.1.S1_atAt3g44890--7e-25At3g44890RPL9 (RIBOSOMAL PROTEIN L9)O.I.H.G.S.X.
0.8096.0PtpAffx.14790.1.A1_s_atAt3g44890hypothetical protein-1e-1At2g24090ribosomal protein L35 family proteinO.I.H.G.S.X.
0.7794.9Ptp.5695.1.S1_a_atAt3g44890hypothetical protein-7e-21At1g48350ribosomal protein L18 family proteinO.I.H.G.S.X.
0.7393.6Ptp.6638.1.S1_s_atAt3g44890hypothetical protein-5e-22At1g79850RPS17 (RIBOSOMAL PROTEIN S17)O.I.H.G.S.X.
0.6086.0PtpAffx.9317.1.S1_atAt3g44890hypothetical protein-1e+0At4g14385-O.I.H.G.S.X.
0.4774.6Ptp.5722.1.S1_atAt3g44890hypothetical protein-2e-15At1g64510ribosomal protein S6 family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Zea_mays



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