Co-expression analysis

Gene ID	1606458_at
Gene name	hypothetical protein LOC100251697
Homology with Arabidopsis	Similar to At3g44890: RPL9 (RIBOSOMAL PROTEIN L9) (HF=4e-11)
Module size	6 genes
NF	0.83
%ile	98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.55	77.3	0.99	1606458_at	BQ792397	hypothetical protein LOC100251697	-	4e-11	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1614138_at	CA815957	hypothetical protein LOC100254839	-	3e-14	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.83	94.6	0.99	1616390_at	CF211469	hypothetical protein LOC100248042	-	1e-41	At3g13120	30S ribosomal protein S10, chloroplast, putative	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1608691_at	CB345817	hypothetical protein LOC100248623	-	6e-27	At1g78630	emb1473 (embryo defective 1473)	O.I.	H.G.	S.X.	Please select
0.80	93.6	0.99	1621569_at	CD801894	hypothetical protein LOC100257626	-	4e-7	At3g27850	RPL12-C (ribosomal protein l12-c)	O.I.	H.G.	S.X.	Please select
0.67	87.9	0.99	1620854_at	CA818411	hypothetical protein LOC100258321	-	7e-12	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
4.9	97.9	GSM322368	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
4.8	97.8	GSM299457	C_i_rep2	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
4.6	97.6	GSM322367	genotype: Incrocio Manzoni - disease type: Bois Noir infected - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection
3.4	95.5	GSM299453	B_i_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
3.0	94.2	GSM147727	Vitis aestivalis 'Norton ' mock inoculated at 4 h post inoculation	56
3.0	94.2	GSM322370	genotype: Incrocio Manzoni - disease type: Healthy - rep2	GSE12842	Gene expression in grapevine in response to Bois noir infection
2.9	93.8	GSM287885	Green soft berry A22 from plant 2 cluster proximal position, biological rep 1	GSE11406	Expression data in individual grape berries during ripening initation
2.7	93.0	GSM299461	C_ni_rep1	GSE11857	Gene expression patterns associated with grapevine resistance to downy mildew mediated by the Rpv1 and Rpv2 genes
2.5	91.9	GSM287882	Green soft berry A21 from plant 1 cluster proximal position, biological rep 2	GSE11406	Expression data in individual grape berries during ripening initation
2.5	91.9	GSM322369	genotype: Incrocio Manzoni - disease type: Healthy - rep1	GSE12842	Gene expression in grapevine in response to Bois noir infection

Inter-species module comparison

A co-expression module including the soybean gene, Gma.15874.1.S1_at, orthologous to the query gene, 1606458_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.1	Gma.15874.1.S1_at	At3g44890	-	-	3e-18	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	O.I.	H.G.	S.X.	Please select
0.84	92.6	Gma.7972.1.S1_at	At3g44890	-	-	2e+0	At4g24310	unknown protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.13099.1.S1_at	At3g44890	-	-	8e-12	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.17460.1.S1_s_at	At3g44890	-	-	1e-3	At5g65220	ribosomal protein L29 family protein	O.I.	H.G.	S.X.	Please select
0.76	89.7	Gma.7200.1.S1_at	At3g44890	-	-	6e-32	At1g17650	GLYR2 (GLYOXYLATE REDUCTASE 2)	O.I.	H.G.	S.X.	Please select
0.73	88.9	Gma.7148.1.A1_at	At3g44890	-	-	9e-17	At5g57170	macrophage migration inhibitory factor family protein / MIF family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.11178.1.S1_at	At3g44890	-	-	1e-7	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.2305.1.S1_at	At3g44890	-	-	2e-19	At2g33800	ribosomal protein S5 family protein	O.I.	H.G.	S.X.	Please select
0.71	87.8	Gma.4606.1.S1_at	At3g44890	-	-	9e-12	At5g13510	ribosomal protein L10 family protein	O.I.	H.G.	S.X.	Please select
0.68	86.4	Gma.13001.2.S1_a_at	At3g44890	-	-	5e-12	At4g17560	ribosomal protein L19 family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	Gma.5851.3.S1_at	At3g44890	-	-	1e-11	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	O.I.	H.G.	S.X.	Please select
0.63	82.9	Gma.1956.2.S1_a_at	At3g44890	-	-	2e-2	At5g25600	-	O.I.	H.G.	S.X.	Please select
0.61	81.8	Gma.10595.1.S1_at	At3g44890	-	-	2e-40	At1g64510	ribosomal protein S6 family protein	O.I.	H.G.	S.X.	Please select
0.59	79.5	Gma.3419.1.S1_at	At3g44890	-	-	4e-17	At3g25920	RPL15	O.I.	H.G.	S.X.	Please select
0.57	78.8	Gma.10730.1.S1_at	At3g44890	-	-	1e-16	At1g68590	plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative	O.I.	H.G.	S.X.	Please select
0.56	78.2	Gma.5413.3.S1_a_at	At3g44890	-	-	1e-9	At2g24090	ribosomal protein L35 family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.5702.1.S1_a_at	At3g44890	-	-	1e-11	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	O.I.	H.G.	S.X.	Please select
0.51	72.3	Gma.6.1.A1_at	At3g44890	ribosomal protein L22	-	1e-13	Atcg00810	-	O.I.	H.G.	S.X.	Please select
0.51	72.3	GmaAffx.91630.1.S1_s_at	At3g44890	-	-	4e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Zea_mays

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