Co-expression analysis

Gene ID 1606436_s_at
Gene name hypothetical protein LOC100243286
Homology with ArabidopsisSimilar to At4g30430: TET9 (TETRASPANIN9) (HF=7e-4)
Module size 30 genes
NF 0.36
%ile 52.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.971606436_s_atCB007992hypothetical protein LOC100243286-7e-4At4g30430TET9 (TETRASPANIN9)O.I.H.G.S.X.
0.5375.20.991611412_atCF517248hypothetical protein LOC100244694-2e+0At5g37480unknown proteinO.I.H.G.S.X.
0.5173.20.991611228_a_atCB922630hypothetical protein LOC100257366-2e+0At3g60260phagocytosis and cell motility protein ELMO1-relatedO.I.H.G.S.X.
0.4666.50.991606368_s_atCF208516actin 1-0At5g09810ACT7 (ACTIN 7)O.I.H.G.S.X.
0.4666.50.99AFFX-Vvi-actin-3_s_atactin 1--O.I.H.G.S.X.
0.4564.60.981607887_atCF215963hypothetical protein LOC100241008-2e+0At5g50880unknown proteinO.I.H.G.S.X.
0.4464.10.981607444_atBQ798524hypothetical protein LOC100247182-1e+0At4g20095unknown proteinO.I.H.G.S.X.
0.4361.50.991620790_atCF515444hypothetical protein LOC100249710-5e-4At5g43960nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4260.10.97AFFX-r2-P1-cre-3_at---O.I.H.G.S.X.
0.4260.10.991618690_atCF207597hypothetical protein LOC100259195-3e-16At1g20110zinc finger (FYVE type) family proteinO.I.H.G.S.X.
0.4158.70.99AFFX-Vvi-actin-3_c2_s_atactin 1--O.I.H.G.S.X.
0.4057.70.991612924_s_atCD798445hypothetical protein LOC100240752-2e-22At4g14800PBD2 (20S PROTEASOME BETA SUBUNIT 2)O.I.H.G.S.X.
0.4057.70.99AFFX-Vvi-actin-3_c6_s_atactin 1--O.I.H.G.S.X.
0.3751.70.991609191_s_atCB978023hypothetical protein LOC100258056-0At5g26751ATSK11O.I.H.G.S.X.
0.3751.70.981618764_atCB978345hypothetical protein LOC100252979-5e-1At5g09910ATP binding / GTP binding / transcription factor bindingO.I.H.G.S.X.
0.3650.70.991619471_atBQ794353hypothetical protein LOC100243217-1e-112At3g46060ATRAB8AO.I.H.G.S.X.
0.3650.70.981612023_atCF207458hypothetical protein LOC100251780 /// hypothetical LOC100255545-8e-3At2g44140autophagy 4a (APG4a)O.I.H.G.S.X.
0.3650.70.991611523_atCD801109hypothetical protein LOC100267138-6e-16At3g21865PEX22 (peroxin 22)O.I.H.G.S.X.
0.3446.80.98AFFX-Vvi-actin-3_c7_s_atactin 1--O.I.H.G.S.X.
0.3243.10.981615514_s_atCF518509hypothetical protein LOC100241557-1e-20At5g47120ATBI1 (BAX INHIBITOR 1)O.I.H.G.S.X.
0.3141.30.981608147_s_atCD802354hypothetical protein LOC100265256-4e-72At1g52740HTA9 (HISTONE H2A PROTEIN 9)O.I.H.G.S.X.
0.3141.30.97AFFX-Vvi-X03453-2_s_at---O.I.H.G.S.X.
0.2937.70.981612815_atCB972191hypothetical protein LOC100263293-4e-17At5g41910RNA polymerase II mediator complex protein-relatedO.I.H.G.S.X.
0.2837.70.981615672_atBQ800515hypothetical protein LOC100267237-2e-7At1g51200zinc finger (AN1-like) family proteinO.I.H.G.S.X.
0.2734.00.981614602_atCB004149hypothetical protein LOC100244335-1e-32At2g47900AtTLP3 (TUBBY LIKE PROTEIN 3)O.I.H.G.S.X.
0.2734.00.981616337_atCB914494hypothetical protein LOC100246803-1e-9At3g07170sterile alpha motif (SAM) domain-containing proteinO.I.H.G.S.X.
0.2530.50.971614346_atCF404597hypothetical protein LOC100259128-3e-1At4g28530anac074 (Arabidopsis NAC domain containing protein 74)O.I.H.G.S.X.
0.2428.70.981622738_atCB342472hypothetical protein LOC100243793-2e-28At3g52300ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL)O.I.H.G.S.X.
0.2022.40.981609424_atCD798745hypothetical protein LOC100263956-7e-30At3g13670protein kinase family proteinO.I.H.G.S.X.
0.2022.40.991619211_s_atCD798358hypothetical protein LOC100256723-6e-47At1g17730VPS46.1 (VACUOLAR PROTEIN SORTING 46.1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
2.993.8GSM322369genotype: Incrocio Manzoni - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.289.9GSM322364genotype: Chardonnay - disease type: Healthy - rep1GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM322366genotype: Chardonnay - disease type: Healthy - rep3GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
2.088.2GSM322370genotype: Incrocio Manzoni - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.987.2GSM436348Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.886.0GSM147721Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 4 h post inoculation50Link to GEO
1.886.0GSM436389V. riparia (VR, PI588259) LD, 15h 1 days - rep2GSE17502Photoperiod regulation of grape bud dormancyLink to GEO
1.784.7GSM322365genotype: Chardonnay - disease type: Healthy - rep2GSE12842Gene expression in grapevine in response to Bois noir infectionLink to GEO
1.784.7GSM147722Vitis aestivalis 'Norton ' infected w/ powdery mildew (Erysiphe necator) conidiospores 8 h post inoculation51Link to GEO
1.784.7GSM436367Seyval (SV, Seyve Villard 5-276) SD, 13h 1 days - rep1GSE17502Photoperiod regulation of grape bud dormancyLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage