Co-expression analysis

Gene ID	1606368_s_at
Gene name	actin 1
Homology with Arabidopsis	Similar to At5g09810: ACT7 (ACTIN 7) (HF=0)
Module size	6 genes
NF	0.83
%ile	98.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	0.99	1606368_s_at	CF208516	actin 1	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.91	98.8	0.99	AFFX-Vvi-actin-3_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.80	93.6	1.00	AFFX-Vvi-actin-3_c6_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.73	90.8	0.99	AFFX-Vvi-actin-3_c7_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.71	89.5	0.99	AFFX-Vvi-actin-3_c2_s_at		actin 1	-			-	O.I.	H.G.	S.X.	Please select
0.44	64.1	0.99	1611412_at	CF517248	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
2.0	88.2	GSM436371	Seyval (SV, Seyve Villard 5-276) SD, 13h 3 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436361	Seyval (SV, Seyve Villard 5-276) LD, 15h 28 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.6	83.3	GSM436349	Seyval (SV, Seyve Villard 5-276) LD, 15h 3 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436414	V. riparia (VR, PI588259) SD, 13h 3 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436355	Seyval (SV, Seyve Villard 5-276) LD, 15h 14 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436385	Seyval (SV, Seyve Villard 5-276) SD, 13h 42 days - rep1	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436389	V. riparia (VR, PI588259) LD, 15h 1 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436383	Seyval (SV, Seyve Villard 5-276) SD, 13h 28 days - rep2	GSE17502	Photoperiod regulation of grape bud dormancy
1.5	81.7	GSM436396	V. riparia (VR, PI588259) LD, 15h 7 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy
1.4	79.9	GSM436348	Seyval (SV, Seyve Villard 5-276) LD, 15h 1 days - rep3	GSE17502	Photoperiod regulation of grape bud dormancy

Inter-species module comparison

A co-expression module including the wheat gene, Ta.28253.1.S1_at, orthologous to the query gene, 1606368_s_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.64	83.6	Ta.28253.1.S1_at	At5g09810	-	-	0	At5g09810	ACT7 (ACTIN 7)	O.I.	H.G.	S.X.	Please select
0.87	94.2	AFFX-Tae-r2-Ec-bioB-3_at	At5g09810	-	-				O.I.	H.G.	S.X.	Please select
0.83	93.4	Ta.1342.2.S1_x_at	At5g09810	-	-	4e-1	At2g23090	unknown protein	O.I.	H.G.	S.X.	Please select
0.81	92.4	Ta.28553.7.S1_x_at	At5g09810	Ubiquitin protein	-	3e-111	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.80	92.2	Ta.1342.1.S1_s_at	At5g09810	-	-	6e-9	At2g23090	unknown protein	O.I.	H.G.	S.X.	Please select
0.79	91.3	Ta.28553.7.S1_at	At5g09810	Ubiquitin protein	-	3e-111	At4g05050	UBQ11 (UBIQUITIN 11)	O.I.	H.G.	S.X.	Please select
0.78	91.1	Ta.28553.6.S1_x_at	At5g09810	-	-	7e-47	At4g02890	UBQ14	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.1058.2.S1_at	At5g09810	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.74	89.4	Ta.1058.1.S1_x_at	At5g09810	S-adenosylmethionine decarboxylase precursor	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	O.I.	H.G.	S.X.	Please select
0.73	89.1	AFFX-Tae-r2-Bs-thr-M_s_at	At5g09810	-	-				O.I.	H.G.	S.X.	Please select
0.72	88.3	Ta.1058.2.S1_x_at	At5g09810	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.2505.1.A1_x_at	At5g09810	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.67	86.3	Ta.5057.3.A1_at	At5g09810	Profilin /// Profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	O.I.	H.G.	S.X.	Please select
0.63	83.1	Ta.1078.2.S1_a_at	At5g09810	Cyclophilin	-	8e-6	At4g38740	ROC1 (ROTAMASE CYP 1)	O.I.	H.G.	S.X.	Please select
0.61	82.0	AFFX-Tae-r2-Bs-thr-5_s_at	At5g09810	-	-				O.I.	H.G.	S.X.	Please select
0.60	81.0	Ta.27101.10.S1_x_at	At5g09810	-	-	1e-26	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.1310.1.S1_x_at	At5g09810	translationally controlled tumor protein	-	1e-10	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	O.I.	H.G.	S.X.	Please select
0.59	79.8	Ta.2505.1.A1_at	At5g09810	-	-	2e-33	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.57	79.2	Ta.28783.1.S1_x_at	At5g09810	single-stranded nucleic acid binding protein	-	5e-4	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.55	76.8	Ta.2502.1.S1_a_at	At5g09810	HSP80-2	-	0	At5g56000	heat shock protein 81-4 (HSP81-4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Zea_mays

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